This interface is created with the configuration file ncbo.cfg shown below
<?xml version="1.3.1" encoding="UTF-8"?>
<ns:phenote-configuration version="1.1.2" xmlns:ns="phenote/config/xml">
<ns:log config-file="conf/log4j-standalone.xml"/>
<ns:dataadapter name="phenote.dataadapter.delimited.DelimitedFileAdapter" enable="true"/>
<ns:dataadapter name="phenote.dataadapter.phenosyntax.PhenoSyntaxFileAdapter" enable="true"/>
<ns:dataadapter name="phenote.dataadapter.phenoxml.PhenoXmlAdapter" enable="false"/>
<ns:dataadapter name="phenote.dataadapter.nexus.NEXUSAdapter" enable="false"/>
<ns:uvic-graph enable="false"/>
<ns:term-history enable="false"/>
<ns:auto-update-ontologies enable="true"/> <
<ns:update-timer timer="0"/><>
<ns:obo-repository url-dir="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/"/>
<ns:field name="Pub" syntax-abbrev="PUB" enable="true"/>
<ns:field name="Genotype" syntax-abbrev="GT" enable="true"/>
<ns:field name="Genetic Context" syntax-abbrev="GC" enable="true">
<ns:ontology name="Genetic Context" file="context.obo"/>
</ns:field>
<ns:field name="Entity" syntax-abbrev="E" enable="true">
<ns:ontology name="Relationship" file="relationship.obo" is-postcomp-rel="true"/>
<ns:ontology name="FMA" file="fma_obo.obo"/>
<ns:ontology name="EHDAA" file="human-dev-anat-abstract.obo"/>
<ns:ontology name="GO" file="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/genomic-proteomic/gene_ontology.obo" />
<ns:ontology name="CL" file="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/cell_type/cell.obo" />
<ns:ontology name="CHEBI" file="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/chemical/chebi.obo" />
</ns:field>
<ns:field name="Quality" syntax-abbrev="Q" enable="true">
<ns:ontology name="PATO" file="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/quality.obo" />
<ns:ontology name="MP" file="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/mammalian_phenotype.obo" />
</ns:field>
<ns:field name="Add'l Entity" syntax-abbrev="E2" enable="true">
<ns:ontology name="Relationship" file="relationship.obo" is-postcomp-rel="true"/>
<ns:ontology name="FMA" file="fma_obo.obo"/>
<ns:ontology name="EHDAA" file="human-dev-anat-abstract.obo"/>
<ns:ontology name="GO" file="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/genomic-proteomic/gene_ontology.obo" />
<ns:ontology name="CHEBI" file="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/chemical/chebi.obo" />
<ns:ontology name="CL" file="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/cell_type/cell.obo" />
</ns:field>
<ns:field name="Abnormal" syntax-abbrev="Tag" enable="true">
<ns:ontology name="Abnormal" file="quality.obo" slim="abnormal_slim"/>
</ns:field>
<ns:field name="Description" syntax-abbrev="Desc" enable="true"/>
</ns:phenote-configuration>