Difference between revisions of "Anatomy Ontology Conf calls"
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Paula Mabee (talk | contribs) (→Minutes) |
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** e.g. 'naris' in mouse is 'part of nose' | ** e.g. 'naris' in mouse is 'part of nose' | ||
** e.g. 'naris' in uberon with lots of xrefs but missing relationship 'part of' olfactory apparatus | ** e.g. 'naris' in uberon with lots of xrefs but missing relationship 'part of' olfactory apparatus | ||
− | * not sure how often Chris updates Uberon | + | ** not sure how often Chris updates Uberon |
+ | *Terry - developed adult Mouse Anatomy; working with Edinburgh group to update their ontology | ||
+ | ** 'unified mouse anatomy' not an official term, just a descriptor | ||
+ | ** Ed. developmental mouse anatomy developed 15 years ago in an effort to code mouse expressiondata. Built along lines of an atlas by kauffman and baird; partonomy; Used for expression annotation by ... for years now. Two parts: abstract mouse which is a time -inedpent collection of terms in a hierarhy not a dag; and from that extracted stage-dependent hierarchies. stage 28 is postnatal -- this is not developed at all. 8-10 years ago, a postnatal developed by jax. jax added is-a and expanded on stages. Examined all relevant ontologies in updating. Two entities (MA vs. developmental) not connected currently -- working to make it an anatomy ontology encompassing the whole of mouse development. | ||
+ | ** Q: re: timeline? Terry: within next two weeks could give clearer answer. | ||
+ | |||
Revision as of 20:22, 13 June 2011
- Dial-in Number: 800.505.4464, participant passcode 784002#
- Adobe Connect: http://dukeuniversity.acrobat.com/phenoscape
June 13, 2011
Participating: Monte Westerfield, Paula Mabee, Judy Blake, Aaron Zorn, Jeff Bowes, Wasila Dahdul, Jim Balhoff
Agenda
- Judy:
- Discussion on how to initiate the Amniote Anatomy Ontology for terms outside skeletal system
- Report on status of unified anatomy [emap + MA]
- What exactly is abstract mouse?
- Clone MA, UBERON, unified mouse [emap + MA], or abstract mouse?
- Monte:
- Discussion on moving ZFA to GO like model; possibility of implementing VAO import (so that XAO can just clone this VAO chunk when they also clone the rest of ZFA)
- Aaron and Jeff:
- Discussion on setting up modular ontology model and specifics of importing model species-specific information (like devo stage)
Minutes
- Wasila will demonstrate diffs between Uberon and MA usingnon-skeletal terms
- e.g. 'naris' in mouse is 'part of nose'
- e.g. 'naris' in uberon with lots of xrefs but missing relationship 'part of' olfactory apparatus
- not sure how often Chris updates Uberon
- Terry - developed adult Mouse Anatomy; working with Edinburgh group to update their ontology
- 'unified mouse anatomy' not an official term, just a descriptor
- Ed. developmental mouse anatomy developed 15 years ago in an effort to code mouse expressiondata. Built along lines of an atlas by kauffman and baird; partonomy; Used for expression annotation by ... for years now. Two parts: abstract mouse which is a time -inedpent collection of terms in a hierarhy not a dag; and from that extracted stage-dependent hierarchies. stage 28 is postnatal -- this is not developed at all. 8-10 years ago, a postnatal developed by jax. jax added is-a and expanded on stages. Examined all relevant ontologies in updating. Two entities (MA vs. developmental) not connected currently -- working to make it an anatomy ontology encompassing the whole of mouse development.
- Q: re: timeline? Terry: within next two weeks could give clearer answer.
- Judy:
- Discussion on how to initiate the Amniote Anatomy Ontology for terms outside skeletal system
- Report on status of unified anatomy [emap + MA]
- What exactly is abstract mouse?
- Clone MA, UBERON, unified mouse [emap + MA], or abstract mouse?
- Monte:
- Discussion on moving ZFA to GO like model; possibility of implementing VAO import (so that XAO can just clone this VAO chunk when they also clone the rest of ZFA)
- Aaron and Jeff:
- Discussion on setting up modular ontology model and specifics of importing model species-specific information (like devo stage)