Difference between revisions of "Matching Phenotypes"
From phenoscape
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| − | = | + | This page discusses the method developed and implemented in late 2010 for search for, and scoring, phenotype matches between taxa (phenoscape) and zebrafish mutants (ZFIN). |
| + | = Purpose = | ||
| − | = | + | = Selecting Phenotypes from Taxon Annotations = |
| − | + | = Using attributes to limit the scope of quality comparisons = | |
| − | |||
| − | |||
Each phenotype is linked to multiple entities via ''inheres_in_part_of'' relations. | Each phenotype is linked to multiple entities via ''inheres_in_part_of'' relations. | ||
| − | + | = Scoring matches of individual phenotypes = | |
| − | + | = Scoring matches of sets of phenotypes (phenotypic profiles) associated with a gene or taxon node = | |
Revision as of 12:30, 4 January 2011
This page discusses the method developed and implemented in late 2010 for search for, and scoring, phenotype matches between taxa (phenoscape) and zebrafish mutants (ZFIN).
Contents
Purpose
Selecting Phenotypes from Taxon Annotations
Using attributes to limit the scope of quality comparisons
Each phenotype is linked to multiple entities via inheres_in_part_of relations.
Scoring matches of individual phenotypes
Scoring matches of sets of phenotypes (phenotypic profiles) associated with a gene or taxon node
- maxIC
- ICCS
- simIC
- simJ
