Difference between revisions of "Resources for Data Contributors"
From phenoscape
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==Annotating phenotypes== | ==Annotating phenotypes== | ||
| − | We are working on a specialized [[EQ Editor]] for data curation. Until it is ready for use, EQ annotations can be created using [http://www.phenote.org/ Phenote]. | + | ===PhenoMaP EQ Editor=== |
| + | |||
| + | We are working on a specialized [[EQ Editor]] for data curation. Until it is ready for use, EQ annotations can be created using Phenote. | ||
| + | |||
| + | ===Phenote=== | ||
| + | |||
| + | [http://www.phenote.org/ Phenote] is used by ZFIN and FlyBase for mutant phenotype annotation. | ||
| + | * Launch Phenote using the [http://www.phenote.org/phenote/latest/phenote.jnlp webstart link]. | ||
| + | * You can download a customized [[Media:phenomap.cfg.zip|Phenote configuration file]] which is suited to our data. See the [http://www.phenote.org/content/howtos/customize.shtml instructions] on how to use a custom configuration. | ||
| + | * Save your files using the PhenoSyntax file format. | ||
Revision as of 20:51, 7 June 2007
Contents
Viewing ontologies
On the web
Many ontologies are available for browsing at the NCBO BioPortal. For example:
Click the "Visualize" button on the ontology's homepage to browse it graphically.
The taxonomic ontology is not yet available, but it will be generated from the Catalog of Fishes.
On your desktop
You can download the ontologies as OBO files from the above web sites. You can download and install OBO-Edit to view in a desktop application.
Annotating phenotypes
PhenoMaP EQ Editor
We are working on a specialized EQ Editor for data curation. Until it is ready for use, EQ annotations can be created using Phenote.
Phenote
Phenote is used by ZFIN and FlyBase for mutant phenotype annotation.
- Launch Phenote using the webstart link.
- You can download a customized Phenote configuration file which is suited to our data. See the instructions on how to use a custom configuration.
- Save your files using the PhenoSyntax file format.
