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• Ontology Data Service API
  ...s a legacy high-level specification of a common programmatic API needed by EQ editors (such as [[Phenex]] and [http://phenote.org Phenote]) to interface ...e Phenoscape KB [[Data Services]] implement a much richer set of phenotype annotation services than envisioned below (albeit read-only).''
  7 KB (1,119 words) - 20:41, 20 September 2011
• Software roadmap
  ==Phenotype annotation editor== ...List window allowing curators to repeatedly choose one or more taxa for EQ annotation.
  4 KB (512 words) - 19:26, 11 October 2011
• Training and Workshops
  ...utionary patterns. A similarly rich set of tools, such as ontologies, data annotation models, and machine reasoners, have also recently been introduced allowing ...ota) ''Progress in comparative biology can be accelerated through semantic annotation''
  18 KB (2,453 words) - 00:15, 10 December 2019
• Publications and Posters
  ...Balhoff J, Dececchi A, Ibrahim N, Lapp H, Vision T, Mabee, PM (2018) Annotation of phenotypes using ontologies: a Gold Standard for the training and evalua * Manda P, Balhoff J, Vision TJ. '''2016'''. Measuring the importance of annotation granularity to the detection of semantic similarity between phenotype profi
  52 KB (6,895 words) - 22:42, 17 November 2023
• Phenoscape data policy
  [[Category:EQ Annotation]]
  1 KB (174 words) - 13:39, 26 March 2019
• Guide to Character Annotation
  ...cs literature, and provide discussion of special cases and issues in their annotation. The Entity-Quality (EQ) formalism combines ‘Entity’ terms from an anatomical ontology, in our
  38 KB (5,768 words) - 05:13, 16 November 2016
• Data Jamboree 1/Annotation Experiment
  ...wn publications with assistance from project personnel on days 1 and 2. An Annotation Guide with examples of character types commonly encountered in the fish sys ...tation. Only two of the four participants recorded evidence codes for each annotation.
  15 KB (1,736 words) - 18:18, 10 April 2013
• Ontology-enabled reasoning across phenotypes from evolution and model organisms
  ...er state matrices. We use the [[EQ for character matrices| Entity-Quality (EQ) formalism]] to compose these expressions, which was initially conceived fo We combine the EQ annotations we create for evolutionary phenotypes with the EQ annotations created for the myriad of phenotypes observed for mutant model
  7 KB (945 words) - 20:11, 13 December 2019
• KB build process
  ...g so the inputs are, as far as possible, converted to a shared data model. EQ annotations are converted to a specific semantic representation. ...owever some such as MGI use precoordinated phenotype classes instead of an EQ template. In that case, the phenotype instance is simply an instance of the
  11 KB (1,489 words) - 18:14, 27 July 2015
• Terminology
  ; Phenotype: An Entity-Quality (EQ) statement. Semantically, a phenotype is_a PATO:quality AND inheres_in some ; Phenotype annotation: (synonym: phenotype assertion) The connection of a phenotype to a taxon or
  4 KB (599 words) - 16:19, 4 June 2013
• OWL modeling of EQ phenotypes
  [[Category:EQ Annotation]]
  4 KB (622 words) - 21:28, 25 February 2013
• Collaborative Phenotype Annotation
  ** ''Supported, via Bioportal data services. However the EQ entry form is being updated and is somewhat in flux at the moment.'' * Support collaborative phenotype annotation
  12 KB (1,734 words) - 22:44, 18 September 2011
• Project Plan
  :; 1.1 NLP in aid of ontology building and EQ annotation : Curation of legacy phenotypes from the literature is a major bottleneck. ; 3. Phenotype annotation :
  9 KB (1,278 words) - 17:11, 28 August 2012
• Semantics of phenotype annotations
  In Phenoscape data annotation, we typically model a phenotype as a class expression describing a set of o ===Observation annotation===
  3 KB (389 words) - 01:46, 29 August 2011
• Linking Evolution to Genomics Using Phenotype Ontologies
  ...of a particular discipline and provide not only a mechanism for consistent annotation of data, but also greater interoperability among people and machines. The m ...anatomy ontology is being used in combination with the PATO ontology (see EQ format) to describe the comparative morphological characters. We have also
  6 KB (922 words) - 18:05, 2 November 2011
• Annotator tutorial topics
  EQ annotation - Review wiki Guide to Character Annotation
  884 bytes (107 words) - 20:34, 29 November 2012