The Phenote window for sample.cfg
This interface is created with the configuration file sample.cfg shown below:
<?xml version="1.0" encoding="UTF-8"?>
<ns:phenote-configuration version="1.3-beta1" xmlns:ns="phenote/config/xml">
<ns:log config-file="conf/log4j-standalone.xml"/>
<ns:dataadapter name="phenote.dataadapter.delimited.DelimitedFileAdapter" enable="true"/>
<ns:uvic-graph enable="false"/>
<ns:term-history enable="false"/>
<ns:auto-update-ontologies enable="false"/> <
<ns:update-timer timer="15"/><
<ns:field name="Example Free-text" syntax-abbrev="PUB" enable="true"/>
<ns:field name="Genotype" syntax-abbrev="GT" enable="false"/>
<ns:field name="Example Multi-Ontology" syntax-abbrev="E" enable="true">
<ns:ontology name="Relationship" file="relationship.obo" repos-subdir="OBO_REL" is-postcomp-rel="true"/>
<ns:ontology name="GO" file="gene_ontology.obo" repos-subdir="genomic-proteomic"/>
<ns:ontology name="CL" file="cell.obo" repos-subdir="anatomy/cell_type"/>
</ns:field>
<ns:field name="Example Single-Ontology" syntax-abbrev="Q" enable="true">
<ns:ontology name="PATO" file="quality.obo" repos-subdir="phenotype"/>
</ns:field>
<ns:field name="Description" syntax-abbrev="Desc" enable="true"/>
</ns:phenote-configuration>