https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Absence_Phenotypes_in_OWL&feed=atom&action=history
Absence Phenotypes in OWL - Revision history
2024-03-29T01:36:26Z
Revision history for this page on the wiki
MediaWiki 1.31.10
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Absence_Phenotypes_in_OWL&diff=10970&oldid=prev
Jim Balhoff: /* Using OWL class complements or cardinality */
2013-10-18T20:39:25Z
<p><span dir="auto"><span class="autocomment">Using OWL class complements or cardinality</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 20:39, 18 October 2013</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l32" >Line 32:</td>
<td colspan="2" class="diff-lineno">Line 32:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><blockquote><tt>''has_part'' exactly 0 '''dorsal fin'''</tt></blockquote></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><blockquote><tt>''has_part'' exactly 0 '''dorsal fin'''</tt></blockquote></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>This is logically equivalent to the complement expression, and cardinality expressions present the same difficulties just described. Also, while cardinalities other than 0 can be used to express counts, transitive properties such as ''has_part'' cannot be used in cardinality expressions.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>This is logically equivalent to the complement expression, and cardinality expressions present the same difficulties just described. Also, while cardinalities other than 0 can be used to express counts, transitive properties such as ''has_part'' cannot be used in cardinality expressions <ins class="diffchange diffchange-inline">(except possibly in the special case of cardinality 0)</ins>.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=="Lacks all parts of type" quality==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=="Lacks all parts of type" quality==</div></td></tr>
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Jim Balhoff
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Absence_Phenotypes_in_OWL&diff=10945&oldid=prev
Hilmar: Hlapp moved page Absence to Absence Phenotypes in OWL
2013-09-03T22:14:44Z
<p>Hlapp moved page <a href="/wiki/Absence" class="mw-redirect" title="Absence">Absence</a> to <a href="/wiki/Absence_Phenotypes_in_OWL" title="Absence Phenotypes in OWL">Absence Phenotypes in OWL</a></p>
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<td colspan="1" style="background-color: #fff; color: #222; text-align: center;">Revision as of 22:14, 3 September 2013</td>
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Hilmar
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Absence_Phenotypes_in_OWL&diff=10944&oldid=prev
Hilmar at 22:05, 3 September 2013
2013-09-03T22:05:06Z
<p></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 22:05, 3 September 2013</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l48" >Line 48:</td>
<td colspan="2" class="diff-lineno">Line 48:</td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><blockquote><tt>'''lacks all parts of type''' and ''inheres_in'' some '''body''' and ''towards'' value '''dorsal fin'''</tt></blockquote></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><blockquote><tt>'''lacks all parts of type''' and ''inheres_in'' some '''body''' and ''towards'' value '''dorsal fin'''</tt></blockquote></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
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Hilmar
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Absence_Phenotypes_in_OWL&diff=10915&oldid=prev
Jim Balhoff: /* "Lacks all parts of type" quality */
2013-07-24T21:53:14Z
<p><span dir="auto"><span class="autocomment">"Lacks all parts of type" quality</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 21:53, 24 July 2013</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l41" >Line 41:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* A '''lacks all parts of type''' toward '''fin''' should be a subclass of '''lacks all parts of type''' toward '''dorsal fin'''... but is it??</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* A '''lacks all parts of type''' toward '''fin''' should be a subclass of '''lacks all parts of type''' toward '''dorsal fin'''... but is it??</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">Define </del>an explicit OWL representation for '''lacks all parts of type''' introduces some reasoning difficulties. To relate the quality to the missing part, we might expect to use the standard existential restriction:</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">Defining </ins>an explicit OWL representation for '''lacks all parts of type''' introduces some reasoning difficulties. To relate the quality to the missing part, we might expect to use the standard existential restriction:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><blockquote><tt>'''lacks all parts of type''' and ''inheres_in'' some '''body''' and ''towards'' some '''dorsal fin'''</tt></blockquote></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><blockquote><tt>'''lacks all parts of type''' and ''inheres_in'' some '''body''' and ''towards'' some '''dorsal fin'''</tt></blockquote></div></td></tr>
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Jim Balhoff
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Absence_Phenotypes_in_OWL&diff=10914&oldid=prev
Jim Balhoff: /* "Lacks all parts of type" quality */
2013-07-23T22:15:27Z
<p><span dir="auto"><span class="autocomment">"Lacks all parts of type" quality</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 22:15, 23 July 2013</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l45" >Line 45:</td>
<td colspan="2" class="diff-lineno">Line 45:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><blockquote><tt>'''lacks all parts of type''' and ''inheres_in'' some '''body''' and ''towards'' some '''dorsal fin'''</tt></blockquote></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><blockquote><tt>'''lacks all parts of type''' and ''inheres_in'' some '''body''' and ''towards'' some '''dorsal fin'''</tt></blockquote></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>However, we end up with the same backwards reasoning found with absent. <tt>'''lacks all parts of type''' ''towards'' some '''fin'''</tt> is a superclass of <tt>'''lacks all parts of type''' ''towards'' some '''dorsal fin'''</tt>, the opposite of what we intend. But an existential restriction on ''towards'' clearly holds the wrong semantics anyway (and furthermore implies the existence of the absent structure). The object of the towards relation is the type '''dorsal fin''' itself, not some instance.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>However, we end up with the same backwards reasoning found with absent. <tt>'''lacks all parts of type''' ''towards'' some '''fin'''</tt> is a superclass of <tt>'''lacks all parts of type''' ''towards'' some '''dorsal fin'''</tt>, the opposite of what we intend. But an existential restriction on ''towards'' clearly holds the wrong semantics anyway (and furthermore implies the existence of the absent structure). The object of the towards relation is the type '''dorsal fin''' itself, not some instance. <ins class="diffchange diffchange-inline">To reference the class directly we must use it in a value restriction, where we would expect an instance:</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"><blockquote><tt>'''lacks all parts of type''' and ''inheres_in'' some '''body''' and ''towards'' value '''dorsal fin'''</tt></blockquote></ins></div></td></tr>
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Jim Balhoff
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Absence_Phenotypes_in_OWL&diff=10913&oldid=prev
Jim Balhoff: /* "Lacks all parts of type" quality */
2013-07-23T22:13:46Z
<p><span dir="auto"><span class="autocomment">"Lacks all parts of type" quality</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 22:13, 23 July 2013</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l45" >Line 45:</td>
<td colspan="2" class="diff-lineno">Line 45:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><blockquote><tt>'''lacks all parts of type''' and ''inheres_in'' some '''body''' and ''towards'' some '''dorsal fin'''</tt></blockquote></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><blockquote><tt>'''lacks all parts of type''' and ''inheres_in'' some '''body''' and ''towards'' some '''dorsal fin'''</tt></blockquote></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>However, we end up with the same backwards reasoning found with absent. <tt>'''lacks all parts of type''' ''towards'' some '''fin'''</tt> is a superclass of <tt>'''lacks all parts of type''' ''towards'' some '''dorsal fin'''</tt>.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>However, we end up with the same backwards reasoning found with absent. <tt>'''lacks all parts of type''' ''towards'' some '''fin'''</tt> is a superclass of <tt>'''lacks all parts of type''' ''towards'' some '''dorsal fin'''</tt><ins class="diffchange diffchange-inline">, the opposite of what we intend. But an existential restriction on ''towards'' clearly holds the wrong semantics anyway (and furthermore implies the existence of the absent structure). The object of the towards relation is the type '''dorsal fin''' itself, not some instance</ins>.</div></td></tr>
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Jim Balhoff
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Absence_Phenotypes_in_OWL&diff=10912&oldid=prev
Jim Balhoff: /* "Lacks all parts of type" quality */
2013-07-23T22:08:57Z
<p><span dir="auto"><span class="autocomment">"Lacks all parts of type" quality</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 22:08, 23 July 2013</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><blockquote><tt>'''lacks all parts of type''' and ''inheres_in'' some '''body''' and ''towards'' some '''dorsal fin'''</tt></blockquote></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><blockquote><tt>'''lacks all parts of type''' and ''inheres_in'' some '''body''' and ''towards'' some '''dorsal fin'''</tt></blockquote></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">However, we end up with the same backwards reasoning found with absent. <tt>'''lacks all parts of type''' ''towards'' some '''fin'''</tt> is a superclass of <tt>'''lacks all parts of type''' ''towards'' some '''dorsal fin'''</tt>.</ins></div></td></tr>
</table>
Jim Balhoff
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Absence_Phenotypes_in_OWL&diff=10911&oldid=prev
Jim Balhoff: /* "Lacks all parts of type" quality */
2013-07-23T22:07:08Z
<p><span dir="auto"><span class="autocomment">"Lacks all parts of type" quality</span></span></p>
<table class="diff diff-contentalign-left" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 22:07, 23 July 2013</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l41" >Line 41:</td>
<td colspan="2" class="diff-lineno">Line 41:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* A '''lacks all parts of type''' toward '''fin''' should be a subclass of '''lacks all parts of type''' toward '''dorsal fin'''... but is it??</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* A '''lacks all parts of type''' toward '''fin''' should be a subclass of '''lacks all parts of type''' toward '''dorsal fin'''... but is it??</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Define an explicit OWL representation for '''lacks all parts of type''' introduces some reasoning difficulties. To relate the quality to the missing part, we <del class="diffchange diffchange-inline">could </del>use the standard existential restriction:</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Define an explicit OWL representation for '''lacks all parts of type''' introduces some reasoning difficulties. To relate the quality to the missing part, we <ins class="diffchange diffchange-inline">might expect to </ins>use the standard existential restriction:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><blockquote><tt>'''lacks all parts of type''' and ''inheres_in'' some '''body''' and ''towards'' some '''dorsal fin'''</tt></blockquote></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><blockquote><tt>'''lacks all parts of type''' and ''inheres_in'' some '''body''' and ''towards'' some '''dorsal fin'''</tt></blockquote></div></td></tr>
</table>
Jim Balhoff
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Absence_Phenotypes_in_OWL&diff=10910&oldid=prev
Jim Balhoff: /* "Lacks all parts of type" quality */
2013-07-23T22:06:51Z
<p><span dir="auto"><span class="autocomment">"Lacks all parts of type" quality</span></span></p>
<table class="diff diff-contentalign-left" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 22:06, 23 July 2013</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l40" >Line 40:</td>
<td colspan="2" class="diff-lineno">Line 40:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>and...</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>and...</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* A '''lacks all parts of type''' toward '''fin''' should be a subclass of '''lacks all parts of type''' toward '''dorsal fin'''... but is it??</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* A '''lacks all parts of type''' toward '''fin''' should be a subclass of '''lacks all parts of type''' toward '''dorsal fin'''... but is it??</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">Define an explicit OWL representation for '''lacks all parts of type''' introduces some reasoning difficulties. To relate the quality to the missing part, we could use the standard existential restriction:</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"><blockquote><tt>'''lacks all parts of type''' and ''inheres_in'' some '''body''' and ''towards'' some '''dorsal fin'''</tt></blockquote></ins></div></td></tr>
</table>
Jim Balhoff
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Absence_Phenotypes_in_OWL&diff=10904&oldid=prev
Jim Balhoff: /* "Lacks all parts of type" quality */
2013-07-23T01:55:33Z
<p><span dir="auto"><span class="autocomment">"Lacks all parts of type" quality</span></span></p>
<table class="diff diff-contentalign-left" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 01:55, 23 July 2013</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l36" >Line 36:</td>
<td colspan="2" class="diff-lineno">Line 36:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=="Lacks all parts of type" quality==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=="Lacks all parts of type" quality==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The solution provided by PATO for the problems with the '''absent''' quality is the "relational" quality '''lacks all parts of type'''. Relational qualities in PATO are qualities that are further specified by a relation to another class, for example '''sensitivity''' toward '''ultraviolet light'''. So instead of describing an entity '''dorsal fin''' which bears an '''absent''' quality, we should instead describe the entity '''body''' which bears a quality '''lacks all parts of type''' toward '''dorsal fin'''. At first glance, this approach seems to address all the above issues:</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The solution provided by PATO for the problems with the '''absent''' quality is the "relational" quality '''lacks all parts of type'''. Relational qualities in PATO are qualities that are further specified by a relation to another class, for example '''sensitivity''' toward '''ultraviolet light'''. So instead of describing an entity '''dorsal fin''' which bears an '''absent''' quality, we should instead describe the entity '''body''' which bears a quality '''lacks all parts of type''' toward '''dorsal fin'''. At first glance, this approach seems to address all the above issues:</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* We can describe phenotypes from the quality perspective; '''lacks all parts of type''' is a subclass of '''quality''' and doesn't require a complement expression.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* We can describe phenotypes from the quality perspective; '''lacks all parts of type''' is a subclass of '''quality''' and doesn't require <ins class="diffchange diffchange-inline">use of </ins>a complement expression.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* The instance of '''lacks all parts of type''' ''inheres_in'' an instance of '''body''' rather than in a non-existent '''dorsal fin'''.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* The instance of '''lacks all parts of type''' ''inheres_in'' an instance of '''body''' <ins class="diffchange diffchange-inline">(or other containing structure) </ins>rather than in a non-existent '''dorsal fin'''.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>and...</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>and...</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* A '''lacks all parts of type''' toward '''fin''' should be a subclass of '''lacks all parts of type''' toward '''dorsal fin'''... but is it??</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* A '''lacks all parts of type''' toward '''fin''' should be a subclass of '''lacks all parts of type''' toward '''dorsal fin'''... but is it??</div></td></tr>
</table>
Jim Balhoff