Difference between revisions of "Data Jamboree 2/Preparation"

From phenoscape
Line 18: Line 18:
 
**send link for to Phenoscape publications spreadsheet (public access now)
 
**send link for to Phenoscape publications spreadsheet (public access now)
 
**email each of the four participants pdfs of 3 assigned papers and 3 Phenex files
 
**email each of the four participants pdfs of 3 assigned papers and 3 Phenex files
#* Papers for four ichthylogists selected and in process of being merged and updated with character descriptions
+
* Curation
#* Plan to add TAO terms for EQ annotation at SD workshop (Wasila)
+
**Papers for four ichthylogists selected and in process of being merged and updated with character descriptions
#* Plan to add TTO taxa and make corrections at SD workshop (Peter)  
+
** Plan to add TAO terms for EQ annotation at SD workshop (Wasila)
 +
** Plan to add TTO taxa and make corrections at SD workshop (Peter)
 
*Participant papers
 
*Participant papers
 
**Correspond with participants regarding their three assigned publications for annotation at the data jamboree
 
**Correspond with participants regarding their three assigned publications for annotation at the data jamboree

Revision as of 21:09, 16 September 2008

  • Things to prepare ahead of time
    • Need slims for TAO and PATO (Wasila, Jim)
    • Curation Exercise
      • Revise same (Group annotation exercise) from data jamboree 1
        • Move making Taxon list to beginning; make matrix to merge; add instructions (Wasila)
        • Keep exercise to 1 hour
      • Phenex documentation (Jim)
      • Upload to fileshare; print hard copies for all participants; email to participants (Wasila)
    • Consistency Experiment
      • Revise so that results are publishable (Wasila & all)
      • Upload to fileshare; print hard copies for all participants; email to participants (Wasila)
    • Annotation guide revise (Wasila)
      • Upload to fileshare; print hard copies for all participants; email to participants (Wasila)
  • Things to contact participants about ahead of time (develop letter prior to conference call)
    • bring laptops (Mac or PC?)
      • how to download Phenex, Mesquite; links to each
    • how to subscribe to Phenoscape-curators and Teleost-discuss
    • send link for to Phenoscape publications spreadsheet (public access now)
    • email each of the four participants pdfs of 3 assigned papers and 3 Phenex files
  • Curation
    • Papers for four ichthylogists selected and in process of being merged and updated with character descriptions
    • Plan to add TAO terms for EQ annotation at SD workshop (Wasila)
    • Plan to add TTO taxa and make corrections at SD workshop (Peter)
  • Participant papers
    • Correspond with participants regarding their three assigned publications for annotation at the data jamboree
      • Wasila contacts: Sabaj Perez (Lundberg)
      • Paula contacts: Grande & Mayden & Hilton (done 12 Sept PM)
    • Prepare neXML files for each participant (see Phenoscape Google spreadsheet for status)
      • Include taxon list, matrix, character and state descriptions filled in
      • Prepare CD or USB key with copies of neXML files for each participant
    • Provide corresponding pdf file for each neXML file
  • Participant-personnel pairs:
    • Grande (with Wasila Dahdul)
    • Hilton (with Jim Balhoff)
    • Mayden (with Paula Mabee)
    • Sabaj Perez (with John Lundberg)

(Peter Midford, Jeff Engeman (and Mike Wallinga if attends?) are "floater" curators)

  • Finalize agenda
  • Copies of pubs (2 each)