Difference between revisions of "Database Roadmap"

From phenoscape
(Jan. 26-30)
 
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==Cartik==
 
==Cartik==
  
===Jan. 12-16===
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This is an outline of my tasks in the coming months.
* Work on moving database connection parameters from code to properties file that does not go into SVN. '''[Done]'''
 
* Document inherited database query module in OBD API* '''[In Progress]'''
 
* Finish documentation of the OBD reasoner on the Wiki '''[First iteration done]'''
 
  
===Jan. 19-23===
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===January 2009===
* Investigate implementation of Unit test modules for database queries*
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<sup>*</sup> indicates task dependency
 +
* Work on moving database connection parameters from code to properties file that does not go into SVN.
 +
** STATUS: Complete
 +
* Document inherited database query module in OBD API*
 +
** STATUS: Deferred (lower priority)
 +
* Finish documentation of the OBD reasoner on the Wiki
 +
** STATUS: Complete
 
* Work on Unit test modules for database queries*
 
* Work on Unit test modules for database queries*
 +
** STATUS: Complete
 +
* Document performance metrics of database queries from Unit test cases*
 +
** STATUS: Complete
 +
* Document query optimization patterns for database queries*
 +
** STATUS: Complete
  
===Jan. 26-30===
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===February===
* Begin documenting performance metrics of database queries from Unit test cases* ''[In Progress]''
 
* Begin documenting query optimization patterns for database queries* ''[In Progress]''
 
 
 
===Feb. 2-6===
 
 
* Complete documentation of query execution methods*
 
* Complete documentation of query execution methods*
* Begin implementing improved query methods to speed up execution of anatomy and gene data services
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** STATUS: Complete
 +
* Implement improved query methods to speed up execution of anatomy data services
 
** NOTE: contingent upon completion of previous related tasks marked with *
 
** NOTE: contingent upon completion of previous related tasks marked with *
 +
** STATUS: Complete
 +
* Investigate possible additions to OBD reasoner (with input from Hilmar and Jim)
 +
** STATUS: Added facet to add direct relationships between characters and all of the states they may take. Complete
 +
* Add extinct/extant species information to the database
 +
** STATUS: Complete
 +
* Automate data loader module
 +
** STATUS: Complete
  
===Feb. 9-13===
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===March===
* Complete implementation of improved query methods for anatomy and gene data services
+
* Add Gene data service to Phenoscape
* Investigate possible additions to OBD reasoner (with input from Hilmar and Jim) to infer presence/absence of anatomical features
+
** STATUS: Complete
* Begin implementing augmentations to reasoner to infer presence/absence of anatomical features
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* Add collection information to the database
 
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** STATUS: Complete
===Feb. 16-20===
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* Add Taxon query service to Phenoscape
* Complete augmentations to reasoner
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** STATUS: Complete
* Commence work on adding extinct/extant species information to the database  
 
 
 
===Feb. 23-27===
 
* Finish work on adding extinct/extant species information
 
* Commence work on adding collection information to the database
 
  
===Mar.1-5===
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===April===
* Continue work on adding collection information to the database
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* Add publication information to database
* Commence work on adding publication information to database
 
 
** NOTE: Dependant upon SICI and Endnote work
 
** NOTE: Dependant upon SICI and Endnote work
 +
* Investigate load sharing and connection pooling strategies for Phenoscape prototype
  
===Mar.8-12===
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===May===
* Finish work on adding collection information
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* Refine web services specifications as per Jim's requirements
* Continue work on adding publication information
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* Performance tuning
* Commence work on adding Taxon query service to Phenoscape
 
 
 
===Mar.15-19===
 
* Continue work on Taxon query service
 
* Complete work on publications
 
  
===Mar.22-26===
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===June===
* Complete work on Taxon query service
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* Testing and bug fixes
* Bug fixes
 
  
===Mar.29-Apr.2===
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===July===
* More bug fixes
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* Public release at ASIH
* Status check
 
  
==Jim==
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[[Category:Archive]]

Latest revision as of 19:25, 11 October 2011

This is a development roadmap for the second production iteration of the Phenoscape database and web interface, intended for demonstration and testing at the ASIH 2009 meeting.

Cartik

This is an outline of my tasks in the coming months.

January 2009

* indicates task dependency

  • Work on moving database connection parameters from code to properties file that does not go into SVN.
    • STATUS: Complete
  • Document inherited database query module in OBD API*
    • STATUS: Deferred (lower priority)
  • Finish documentation of the OBD reasoner on the Wiki
    • STATUS: Complete
  • Work on Unit test modules for database queries*
    • STATUS: Complete
  • Document performance metrics of database queries from Unit test cases*
    • STATUS: Complete
  • Document query optimization patterns for database queries*
    • STATUS: Complete

February

  • Complete documentation of query execution methods*
    • STATUS: Complete
  • Implement improved query methods to speed up execution of anatomy data services
    • NOTE: contingent upon completion of previous related tasks marked with *
    • STATUS: Complete
  • Investigate possible additions to OBD reasoner (with input from Hilmar and Jim)
    • STATUS: Added facet to add direct relationships between characters and all of the states they may take. Complete
  • Add extinct/extant species information to the database
    • STATUS: Complete
  • Automate data loader module
    • STATUS: Complete

March

  • Add Gene data service to Phenoscape
    • STATUS: Complete
  • Add collection information to the database
    • STATUS: Complete
  • Add Taxon query service to Phenoscape
    • STATUS: Complete

April

  • Add publication information to database
    • NOTE: Dependant upon SICI and Endnote work
  • Investigate load sharing and connection pooling strategies for Phenoscape prototype

May

  • Refine web services specifications as per Jim's requirements
  • Performance tuning

June

  • Testing and bug fixes

July

  • Public release at ASIH