Database Roadmap

From phenoscape
Revision as of 21:33, 21 January 2009 by Crk18 (talk | contribs) (Jan. 12-16)

This is a development roadmap for the second production iteration of the Phenoscape database and web interface, intended for demonstration and testing at the ASIH 2009 meeting.

Cartik

Jan. 12-16

  • Work on moving database connection parameters from code to properties file that does not go into SVN. [Done]
  • Document inherited database query module in OBD API* [In Progress]
  • Finish documentation of the OBD reasoner on the Wiki [First iteration done]

Jan. 19-23

  • Investigate implementation of Unit test modules for database queries*
  • Work on Unit test modules for database queries*

Jan. 26-30

  • Begin documenting performance metrics of database queries from Unit test cases*
  • Begin documenting query optimization patterns for database queries*

Feb. 2-6

  • Complete documentation of query execution methods*
  • Begin implementing improved query methods to speed up execution of anatomy and gene data services
    • NOTE: contingent upon completion of previous related tasks marked with *

Feb. 9-13

  • Complete implementation of improved query methods for anatomy and gene data services
  • Investigate possible additions to OBD reasoner (with input from Hilmar and Jim) to infer presence/absence of anatomical features
  • Begin implementing augmentations to reasoner to infer presence/absence of anatomical features

Feb. 16-20

  • Complete augmentations to reasoner
  • Commence work on adding extinct/extant species information to the database

Feb. 23-27

  • Finish work on adding extinct/extant species information
  • Commence work on adding collection information to the database

Mar.1-5

  • Continue work on adding collection information to the database
  • Commence work on adding publication information to database
    • NOTE: Dependant upon SICI and Endnote work

Mar.8-12

  • Finish work on adding collection information
  • Continue work on adding publication information
  • Commence work on adding Taxon query service to Phenoscape

Mar.15-19

  • Continue work on Taxon query service
  • Complete work on publications

Mar.22-26

  • Complete work on Taxon query service
  • Bug fixes

Mar.29-Apr.2

  • More bug fixes
  • Status check

Jim