Difference between revisions of "Knowledgebase Reports"

From phenoscape
(Reports on kb-dev)
(Reports on kb-dev)
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** [http://kb-dev.phenoscape.org/OBD-WS/report/count/genes/annotated?query=%7B%22phenotype%22%3A%5B%7B%22entity%22%3A%7B%22id%22%3A%22TAO%3A0001161%22%2C%22including_parts%22%3A%20true%7D%7D%5D%7D pectoral fin and parts only]
 
** [http://kb-dev.phenoscape.org/OBD-WS/report/count/genes/annotated?query=%7B%22phenotype%22%3A%5B%7B%22entity%22%3A%7B%22id%22%3A%22TAO%3A0001161%22%2C%22including_parts%22%3A%20true%7D%7D%5D%7D pectoral fin and parts only]
 
* [http://kb-dev.phenoscape.org/OBD-WS/report/count/annotations/genotypes/curated Count of genotype-phenotype assertions (including morpholinos as genotypes)]
 
* [http://kb-dev.phenoscape.org/OBD-WS/report/count/annotations/genotypes/curated Count of genotype-phenotype assertions (including morpholinos as genotypes)]
** pelvic fin and parts only
+
** [http://kb-dev.phenoscape.org/OBD-WS/report/count/annotations/genotypes/curated?query=%7B%22phenotype%22%3A%5B%7B%22entity%22%3A%7B%22id%22%3A%22TAO%3A0001184%22%2C%22including_parts%22%3A%20true%7D%7D%5D%7D pelvic fin and parts only]
** pectoral fin and parts only
+
** [http://kb-dev.phenoscape.org/OBD-WS/report/count/annotations/genotypes/curated?query=%7B%22phenotype%22%3A%5B%7B%22entity%22%3A%7B%22id%22%3A%22TAO%3A0001161%22%2C%22including_parts%22%3A%20true%7D%7D%5D%7D pectoral fin and parts only]
 
* Count of distinct gene-phenotype assertions (implied by genotype assertions)
 
* Count of distinct gene-phenotype assertions (implied by genotype assertions)
 
** pelvic fin and parts only
 
** pelvic fin and parts only

Revision as of 16:54, 23 July 2010

Reports on production Phenoscape KB

This contains consistency-checked and author-checked files (from 'phenex-files'). It is updated irregularly (every 1-3 months).

Reports on kb-staging

This contains files that are going into production database (from 'phenex-files'); some are updated daily by curators. It is updated nightly.

Reports on kb-extra

This database is equivalent to staging but also includes Sandrine's data files and all incomplete files ('incomplete-files' + 'phenex-files'). It is updated nightly.

Reports on kb-dev

This database is used for active development and may often be broken. It should not be relied upon for everyday use.

Currently, this database is equivalent to staging but also includes Sandrine's data files.