Difference between revisions of "Knowledgebase mockups (Nov 2009)"

From phenoscape
(Publication results on term search pages revision 1)
(Publications)
Line 6: Line 6:
  
 
====Publication results on term search pages revision 1====
 
====Publication results on term search pages revision 1====
[[Image:Pubs1-rev1.png|700px]]
+
 
  
 
====List of publications revision 1====
 
====List of publications revision 1====

Revision as of 19:53, 11 December 2009

Publications

Revision 1

(Powerpoint file containing revisions is on the webdav).

Publication results on term search pages revision 1

List of publications revision 1

Pubs2-rev1.png

Publication detail page revision 1

Pubs3-rev1.png

Original mockups

Integration of publication data across site.

Publication results on term search pages

  • this shows an entity page (entopterygoid) - could have similar layout on taxon and gene searches
  • for each row (phenotype class) - see how many publication are linked to any EQs of that type
  • click one of the count links to go to a page listing those publications

Pubs1.png

List of publications

  • click one of the links to go to that publication's detail page

Pubs2.png

Publication detail page

  • matrix will usually be much bigger - will be scrollable
  • click column header or cell links to go to a phenotype details page showing all related EQs grouped by taxon (as on existing phenotype pages)

Pubs3.png

Comments

Tree mapping

Map 2 phenotypes on tree

  • user can enter phenotype specification for each "state"
  • see on tree which branches exhibit one or both of the phenotypes
  • Do users want the tree "pruned"? Or show branches without annotations also? could be a lot of taxa

Trees1.png

Same interface

  • shows that the 2 phenotypes don't have to be obvious alternatives

Trees2.png

Map phenotypes of a given entity on tree

  • user enters any entity term
  • each of the standard upper-level PATO qualities has some icon
  • each node of tree is annotated with icons for which kinds of phenotypes are exhibited by that node
  • so if you just put in "bone", you could get a "shape" icon at a node for any bone shape phenotype (basihyal bone round, vertebra 1 flat, etc.)

Trees3.png

Comments

Phenotype queries

Entry of phenotype specification

  • user enters a phenotype specification, presses Done

Queries1.png

Additional phenotype specification

  • bottom of page shows taxa which exhibit first phenotype
  • user pressed "+" under first phenotype and can enter another

Queries2.png

Results

  • taxa exhibiting both phenotypes are shown

Queries3.png

Comments

What should happen upon clicking taxon names? --jim 11:38, 18 November 2009 (EST)

  • go to taxon's page?
  • go to phenotype listing for that taxon and given phenotypes?