Difference between revisions of "Ontology Service API Break-out Group"

From phenoscape
 
Line 1: Line 1:
−
==Service Definitions==
+
==Service definitions==
 +
 
 +
# Ontology lookup
 +
#* Function: lookup the ontologies being served by the data service
 +
#* Input:
 +
#* Output:
 +
# Look up term
 +
#* Function: Obtain the full term information for a given ID
 +
#* Input:
 +
#* Output:
 +
# Completion list
 +
#* Function: Obtain matching term names for a partial term name string
 +
#* Input:
 +
#* Output:
 +
# Neighborhood graph
 +
#* Function: Obtain parents, children, descendants, or ancestors for a given term
 +
#* Input:
 +
#* Output:
 +
# Downloading ontology
 +
#* Function: Obtain all terms and relationships comprising an ontology
 +
#* Input:
 +
#* Output:
 +
# Login
 +
#* Function: Given a username and secret, obtain an authentication token
 +
#* Input:
 +
#* Output:
 +
# Save EQ statements
 +
#* Function: Save an array of EQ statements to the data store
 +
#* Input:
 +
#* Output:
 +
# Load EQ statements
 +
#* Function: Load an array of EQ statements from the data store
 +
#* Input:
 +
#* Output:
 +
 
 +
==Query languages==
 +
 
 +
* SPARQL
 +
 
 +
==Data exchange formats==
 +
 
 +
* Text over HTTP:
 +
** OBO format
 +
** OBO-XML format
 +
** OBD-XML format
 +
** RDF

Revision as of 15:39, 14 November 2006

Service definitions

  1. Ontology lookup
    • Function: lookup the ontologies being served by the data service
    • Input:
    • Output:
  2. Look up term
    • Function: Obtain the full term information for a given ID
    • Input:
    • Output:
  3. Completion list
    • Function: Obtain matching term names for a partial term name string
    • Input:
    • Output:
  4. Neighborhood graph
    • Function: Obtain parents, children, descendants, or ancestors for a given term
    • Input:
    • Output:
  5. Downloading ontology
    • Function: Obtain all terms and relationships comprising an ontology
    • Input:
    • Output:
  6. Login
    • Function: Given a username and secret, obtain an authentication token
    • Input:
    • Output:
  7. Save EQ statements
    • Function: Save an array of EQ statements to the data store
    • Input:
    • Output:
  8. Load EQ statements
    • Function: Load an array of EQ statements from the data store
    • Input:
    • Output:

Query languages

  • SPARQL

Data exchange formats

  • Text over HTTP:
    • OBO format
    • OBO-XML format
    • OBD-XML format
    • RDF
Retrieved from "https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Ontology_Service_API_Break-out_Group&oldid=1689"