https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Phenote:Phylogeny_Chooser&feed=atom&action=history
Phenote:Phylogeny Chooser - Revision history
2024-03-29T10:16:27Z
Revision history for this page on the wiki
MediaWiki 1.31.10
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Phenote:Phylogeny_Chooser&diff=4918&oldid=prev
Hilmar at 23:58, 10 January 2009
2009-01-10T23:58:25Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 23:58, 10 January 2009</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l13" >Line 13:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Control-click a node to select or deselect it without affecting the rest of your selection.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Control-click a node to select or deselect it without affecting the rest of your selection.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* You can drag over instead of directly clicking on nodes to select them.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* You can drag over instead of directly clicking on nodes to select them.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[Category:Curation]]</ins></div></td></tr>
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Hilmar
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Phenote:Phylogeny_Chooser&diff=2074&oldid=prev
Jpb15 at 18:45, 9 August 2007
2007-08-09T18:45:11Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 18:45, 9 August 2007</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l8" >Line 8:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Hints:</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Hints:</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* Create your tree using Mesquite, MacClade, or other tree-editing software.</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Any internal node labels in your Newick tree can be displayed by the tree view, making it easier to find the node you're looking for.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Any internal node labels in your Newick tree can be displayed by the tree view, making it easier to find the node you're looking for.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* If there is a problem with your Newick format, the "Newick Tree:" text will be colored red.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* If there is a problem with your Newick format, the "Newick Tree:" text will be colored red.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Control-click a node to select or deselect it without affecting the rest of your selection.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Control-click a node to select or deselect it without affecting the rest of your selection.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* You can drag over instead of directly clicking on nodes to select them.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* You can drag over instead of directly clicking on nodes to select them.</div></td></tr>
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Jpb15
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Phenote:Phylogeny_Chooser&diff=2073&oldid=prev
Jpb15 at 18:11, 9 August 2007
2007-08-09T18:11:24Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 18:11, 9 August 2007</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3" >Line 3:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:phylogeny-chooser.png|center]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:phylogeny-chooser.png|center]]</div></td></tr>
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<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>text</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">You can paste [http://evolution.genetics.washington.edu/phylip/newicktree.html Newick-format] tree </ins>text <ins class="diffchange diffchange-inline">into the "Newick Tree" field at the bottom of the window.  Press "Return", and the tree will be loaded into the window.  Click on any node to select it and its descendants.  Press the "Apply Selection" button, and the specimen list window will come forward - any specimens with exactly matching taxon names will be checked.  Only taxa on the tips of the tree can match specimens (not internal nodes).</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">When the taxonomy ontology is available for inclusion within Phenote, your Newick tree should be composed of ontology IDs from the taxonomy ontology.  The tree view will automatically display the actual taxon name from the ontology.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">Hints:</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Any internal node labels in your Newick tree can be displayed by the tree view, making it easier to find the node you're looking for.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* If there is a problem with your Newick format, the "Newick Tree:" text will be colored red.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Control-click a node to select or deselect it without affecting the rest of your selection.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* You can drag over instead of directly clicking on nodes to select them.</ins></div></td></tr>
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Jpb15
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Phenote:Phylogeny_Chooser&diff=2070&oldid=prev
Jpb15: Phenote:Phylogeny-based Selector moved to Phenote:Phylogeny Chooser
2007-08-09T17:59:22Z
<p><a href="/wiki/Phenote:Phylogeny-based_Selector" class="mw-redirect" title="Phenote:Phylogeny-based Selector">Phenote:Phylogeny-based Selector</a> moved to <a href="/wiki/Phenote:Phylogeny_Chooser" title="Phenote:Phylogeny Chooser">Phenote:Phylogeny Chooser</a></p>
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<td colspan="1" style="background-color: #fff; color: #222; text-align: center;">Revision as of 17:59, 9 August 2007</td>
</tr><tr><td colspan="2" class="diff-notice" lang="en"><div class="mw-diff-empty">(No difference)</div>
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Jpb15
https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Phenote:Phylogeny_Chooser&diff=2069&oldid=prev
Jpb15 at 17:58, 9 August 2007
2007-08-09T17:58:38Z
<p></p>
<p><b>New page</b></p><div>When selecting specimens for EQ editing from the specimen list, a user may want to view a phylogenetic tree relating the specimens, and then simply select a node containing all the specimens to use. This functionality is available in an accessory window within Phenote. When viewing the [[Phenote:Specimen_List|specimen list window]], click on the "Choosers" menu, and select "Phylogeny Chooser". You should see a new window like this:<br />
<br />
[[Image:phylogeny-chooser.png|center]]<br />
<br />
text</div>
Jpb15