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• Phenex
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Phenex release history

Phenex 1.10

Released 2013-07-19.

• [https://github.com/phenoscape/Phenex/compare/v1.9…v1.10 Source changes]
• New features for matrix editing: consolidate selected characters; create new character with selected states.

Phenex 1.9

Released 2013-06-18.

• [https://github.com/phenoscape/Phenex/compare/v1.8…v1.9 Source changes]
• New feature: ORB user settings for provisional term requests are now configurable.
• Unified consistency checking between annotation checker panel and consistency review panel.
• Updated user interface for native look on OS X Mountain Lion.

Phenex 1.8

Released 2013-03-05.

• [https://github.com/phenoscape/Phenex/compare/v1.7…v1.8 Source changes]
• New feature: Consistency review panel

Phenex 1.7

Released 2012-12-07.

• [https://github.com/phenoscape/Phenex/compare/v1.6.3…v1.7 Source changes]
• New feature: Annotation checker panel
• Increased max memory setting to 2 gigabytes.

Phenex 1.6.3

Released 2012-12-05.

• [https://github.com/phenoscape/Phenex/compare/v1.6.2…v1.6.3 Source changes]
• Bugfix: Added missing Phenex relations list to default ontology configuration.

Phenex 1.6.2

Released 2012-12-03.

• [https://github.com/phenoscape/Phenex/compare/v1.6.1…v1.6.2 Source changes]
• Fixed a problem with the version number in the release.

Phenex 1.6.1

Released 2012-12-03.

• [https://github.com/phenoscape/Phenex/compare/v1.6…v1.6.1 Source changes]
• Updated entities filter to allow any term with the UBERON prefix.
• Fixed editing issue with publication notes field.
• Fixed null pointer exception in tab-delimited export.

Phenex 1.6

Released 2012-10-09.

• [https://github.com/phenoscape/Phenex/compare/v1.5.1…v1.6 Source changes]
• New feature: full support for reading, writing, and editing polymorphic values within matrix cells.
• Removed NEXUS import features. NEXUS files should instead be converted to NeXML using Mesquite.

Phenex 1.5.1

Released 2012-10-03.

• [https://github.com/phenoscape/Phenex/compare/v1.5…v1.5.1 Source changes]
• Fixed a problem with download of provisional terms from Bioportal.

Phenex 1.5

Released 2012-09-20.

• [https://github.com/phenoscape/Phenex/compare/v1.4.3…v1.5 Source changes]
• New feature: auto-migration of obsolete terms when there is a replaced_by tag.
• New feature: auto-migration of provisional terms when a permanent ID has been assigned.
• New feature: reading and writing of polymorphic/uncertain states from/to NeXML (this roundtrips values, but does not allow editing).
• Phenex now displays an alert panel, rather than crashes, when there has been an ontology load error.
• Reversed default for autosave feature (default is now OFF).

Phenex 1.4.3

Released 2012-08-17.

• [https://github.com/phenoscape/Phenex/compare/v1.4.2…v1.4.3 Source changes]
• Updated OBO-Edit libraries.

Phenex 1.4.2

Released 2012-08-15.

• [https://github.com/phenoscape/Phenex/compare/v1.4.1…v1.4.2 Source changes]

Phenex 1.4.1

Released 2012-08-03.

• [https://github.com/phenoscape/Phenex/compare/v1.4…v1.4.1 Source changes]

Phenex 1.4

Released 2012-08-03.

• [https://github.com/phenoscape/Phenex/compare/v1.2.1…v1.4 Source changes]

Phenex 1.2.1

Released 2012-01-30.

• [https://github.com/phenoscape/Phenex/compare/v1.2…v1.2.1 Source changes]

Phenex 1.2

Released 2012-01-26.

• Source changes

Phenex 1.1.4

Released 2011-09-20.

• Source changes

Phenex 1.1.3

Released 2011-09-14.

• Source changes

Phenex 1.1.2

Released 2010-10-25.

• Source changes

Phenex 1.1.1

Released 2010-09-20.

• Source changes

Phenex 1.1

Released 2010-09-02.

• Source changes

Phenex 1.0.5

Released 2010-07-19.

• Source changes