View source for Knowledgebase mockups (Nov 2009)

==Publications==

=== Revision 1 ===
====Publication results on term search pages revision 1====

====List of publications revision 1====

====Publication detail page revision 1 ====



=== Original publication mockups ===
Integration of publication data across site.

====Publication results on term search pages====
* this shows an entity page (entopterygoid) - could have similar layout on taxon and gene searches
* for each row (phenotype class) - see how many publication are linked to any EQs of that type
* click one of the count links to go to a page listing those publications

[[Image:pubs1.png|700px]]

====List of publications====
* click one of the links to go to that publication's detail page

[[Image:pubs2.png|700px]]

====Publication detail page====
* matrix will usually be much bigger - will be scrollable
* click column header or cell links to go to a phenotype details page showing all related EQs grouped by taxon (as on existing phenotype pages)

[[Image:pubs3.png|700px]]

====Comments====

==Tree mapping==
===Map 2 phenotypes on tree===
* user can enter phenotype specification for each "state"
* see on tree which branches exhibit one or both of the phenotypes
* Do users want the tree "pruned"?  Or show branches without annotations also?  could be a lot of taxa

[[Image:trees1.png|700px]]

===Same interface===
* shows that the 2 phenotypes don't have to be obvious alternatives

[[Image:trees2.png|700px]]

===Map phenotypes of a given entity on tree===
* user enters any entity term
* each of the standard upper-level PATO qualities has some icon
* each node of tree is annotated with icons for which kinds of phenotypes are exhibited by that node
* so if you just put in "bone", you could get a "shape" icon at a node for any bone shape phenotype (basihyal bone round, vertebra 1 flat, etc.)

[[Image:trees3.png|700px]]

===Comments===

==Phenotype queries==
===Entry of phenotype specification===
* user enters a phenotype specification, presses Done

[[Image:queries1.png|700px]]

===Additional phenotype specification===
* bottom of page shows taxa which exhibit first phenotype
* user pressed "+" under first phenotype and can enter another

[[Image:queries2.png|700px]]

===Results===
* taxa exhibiting both phenotypes are shown

[[Image:queries3.png|700px]]

===Comments===
What should happen upon clicking taxon names? --[[User:Jpb15|jim]] 11:38, 18 November 2009 (EST)
* go to taxon's page?
* go to phenotype listing for that taxon and given phenotypes?

[[Category:User Interface]]