Difference between revisions of "Acknowledgments"

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==Project team==
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== Project team ==
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=== SCATE Project ===
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{| width="90%"
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|- align="left" valign="top" style="font-weight: bold;"
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| style="width: 48%;" | University of North Carolina at Chapel Hill
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| style="width: 48%;" | University of South Dakota
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|- valign="top"
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|
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* [http://visionlab.web.unc.edu/ Todd Vision] (Department of Biology)
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* [http://www.mendeley.com/profiles/jim-balhoff/ Jim Balhoff] (Renaissance Computing Institute)
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* Shalki Shrivastava (Renaissance Computing Institute)
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|
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* [https://www.usd.edu/faculty-and-staff/Paula-Mabee Paula Mabee] (Department of Biology)
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* [https://orcid.org/0000-0003-3162-7490 Wasila Dahdul] (Department of Biology)
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|
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|- style="height: 5px;"
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|
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|- align="left" style="font-weight: bold; "
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| Duke University
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| Virginia Tech
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|- valign="top"
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|
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* [[User:Hilmar| Hilmar Lapp]] (Center for Genomic and Computational Biology)
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* Amandeep Rathee (M.Sc. Student)
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|
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* [http://www.uyedalab.com/ Josef Uyeda] (Department of Biological Sciences)
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* Diego Sasso Porto (postdoc)
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* Sergei Tarasov (now at Finnish Museum of Natural History)
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|}
 +
 
 +
=== Phenoscape II Project ===
  
 
{| width="90%"
 
{| width="90%"
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* [http://visionlab.web.unc.edu/ Todd Vision] (also University of North Carolina at Chapel Hill)
 
* [http://visionlab.web.unc.edu/ Todd Vision] (also University of North Carolina at Chapel Hill)
 
* [[User:Hilmar| Hilmar Lapp]] (now at Duke University, Center for Genomic and Computational Biology)
 
* [[User:Hilmar| Hilmar Lapp]] (now at Duke University, Center for Genomic and Computational Biology)
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* [http://www.mendeley.com/profiles/jim-balhoff/ Jim Balhoff] (now at RTI, Inc.)
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* [http://www.mendeley.com/profiles/jim-balhoff/ Jim Balhoff] (now at RTI Intl.)
 
* Prashanti Manda (now at University of North Carolina at Greensboro)
 
* Prashanti Manda (now at University of North Carolina at Greensboro)
 
|
 
|
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|- valign="top"
 
|- valign="top"
 
|
 
|
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* [http://paulsereno.uchicago.edu Paul Sereno]
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* Paul Sereno
 
* Nizar Ibrahim
 
* Nizar Ibrahim
 
|
 
|
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* David Blackburn
 
* David Blackburn
 
|
 
|
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* [http://sites.google.com/site/biosemanticsproject/project-overview Hong Cui]
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* Hong Cui
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* [http://www.linkedin.com/pub/zilong-chang/3a/348/585 Zilong Chang]
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* Zilong Chang
 
|
 
|
 
* Chris Mungall
 
* Chris Mungall
 
|}
 
|}
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 +
=== Phenoscape I Project ===
 +
 +
* Paula Mabee, University of South Dakota
 +
* Monte Westerfield, Zebrafish Information Network and University of Oregon
 +
* Todd Vision, National Evolutionary Synthesis Center and University of North Carolina at Chapel Hill
 +
* Hilmar Lapp, National Evolutionary Synthesis Center
 +
* Jim Balhoff, National Evolutionary Synthesis Center
 +
* Wasila Dahdul, University of South Dakota
 +
* Peter Midford, National Evolutionary Synthesis Center
  
 
==Advisory Board==
 
==Advisory Board==
  
−
=== Members ===
+
=== SCATE Project ===
 +
'''Members'''
 +
* Scott Chamberlain (rOpenSci)
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* Emily Jane McTavish (University of California, Merced)
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* Brian Sidlauskas (Oregon State University)
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* Pam Soltis (University of Florida)
 +
* Paul Thomas (University of Southern California)
 +
 
 +
'''Meetings'''
 +
* Advisory Board meeting on January 7, 2020, after the SSB 2020 meeting at University of Florida
 +
 
 +
 
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=== Phenoscape II ===
 +
'''Members'''
 
* John Day-Richter (Google)
 
* John Day-Richter (Google)
 
* Brian K. Hall (Dalhousie University)
 
* Brian K. Hall (Dalhousie University)
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* Alan Ruttenberg (University of Buffalo)
 
* Alan Ruttenberg (University of Buffalo)
  
−
=== Meetings ===
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'''Meetings'''
 
*  [[WG:Advisory Board Meeting 2013-12-12| Advisory Board meeting on Dec. 12, 2013]]. (by conference call): [[Media:Phenoscape_Dec_2013_AB_notes.pdf| agenda and notes]]
 
*  [[WG:Advisory Board Meeting 2013-12-12| Advisory Board meeting on Dec. 12, 2013]]. (by conference call): [[Media:Phenoscape_Dec_2013_AB_notes.pdf| agenda and notes]]
 
* [[WG:Advisory Board Meeting 2012-12-04| Advisory Board meeting on Dec. 4, 2012]]. (by conference call): [[Media:Phenoscape_AB_Dec2012_minutes.pdf| agenda and notes]]
 
* [[WG:Advisory Board Meeting 2012-12-04| Advisory Board meeting on Dec. 4, 2012]]. (by conference call): [[Media:Phenoscape_AB_Dec2012_minutes.pdf| agenda and notes]]
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* Nizar Ibrahim, University of Chicago
 
* Nizar Ibrahim, University of Chicago
 
* Laura Jackson, University of South Dakota
 
* Laura Jackson, University of South Dakota
 +
* Tova Just, Bryn Mawr College
 
* John Lundberg, The Academy of Natural Sciences, Philadelphia
 
* John Lundberg, The Academy of Natural Sciences, Philadelphia
 
* Paula Mabee, University of South Dakota
 
* Paula Mabee, University of South Dakota
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* Ericka Grey, University of South Dakota
 
* Ericka Grey, University of South Dakota
 
* Laura Jackson, University of South Dakota
 
* Laura Jackson, University of South Dakota
 +
* Tova Just, Bryn Mawr College
 
* Jun Hong Kim, Duke University
 
* Jun Hong Kim, Duke University
 
* Jonathan Lee, Duke University
 
* Jonathan Lee, Duke University
 
* Leah Mabee, University of South Dakota
 
* Leah Mabee, University of South Dakota
 +
* Callie Mao, Duke University
 
* Mtakai Ngara, International Institute of Tropical Agriculture, Nairobi, Kenya
 
* Mtakai Ngara, International Institute of Tropical Agriculture, Nairobi, Kenya
 
* Carla Perez, Duke University
 
* Carla Perez, Duke University
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* Brad Schanche, University of South Dakota
 
* Brad Schanche, University of South Dakota
 
* Michael Wallinga, University of South Dakota
 
* Michael Wallinga, University of South Dakota
 +
* Hong Xu, Duke University
 +
* Lucy Zhang, Duke University
  
 
===Groups===
 
===Groups===
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==Data sources==
 
==Data sources==
 +
* [https://monarchinitiative.org Monarch Initiative] - aggregated and semantically harmonized model organism and human genes and phenotypes
 
* [http://zfin.org ZFIN] - mutant and morpholino zebrafish genes and phenotypes
 
* [http://zfin.org ZFIN] - mutant and morpholino zebrafish genes and phenotypes
 
* [http://research.calacademy.org/ichthyology/catalog Catalog of Fishes] - fish taxonomy, list of collections
 
* [http://research.calacademy.org/ichthyology/catalog Catalog of Fishes] - fish taxonomy, list of collections
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==Funding==
 
==Funding==
−
The Phenoscape II project is funded by NSF collaborative grants DBI-1062404 and DBI-1062542 grant, and is supported by the National Evolutionary Synthesis Center (NESCent), NSF #EF-0905606. Its predecessor, the [[Phenoscape I]] project, was funded by NSF grant BDI-0641025, and supported by NESCent, NSF #EF-0423641.
+
The [http://scate.phenoscape.org SCATE project] is funded by NSF collaborative grants DBI-1661456 (Duke University), DBI-1661529 (Virginia Tech), DBI-1661516 (University of South Dakota), and DBI-1661356 (UNC Chapel Hill and RENCI). The Phenoscape II project was funded by NSF collaborative grants DBI-1062404 and DBI-1062542 grant and the National Evolutionary Synthesis Center (NESCent), NSF #EF-0905606. Its predecessor, the [[Phenoscape I]] project, was funded by NSF grant BDI-0641025, and supported by NESCent, NSF #EF-0423641.
  
 
[[Category:Curation]]
 
[[Category:Curation]]
 
[[Category:Community]]
 
[[Category:Community]]

Latest revision as of 23:44, 16 December 2019

Project team

SCATE Project

University of North Carolina at Chapel Hill University of South Dakota
  • Todd Vision (Department of Biology)
  • Jim Balhoff (Renaissance Computing Institute)
  • Shalki Shrivastava (Renaissance Computing Institute)
Duke University Virginia Tech
  • Hilmar Lapp (Center for Genomic and Computational Biology)
  • Amandeep Rathee (M.Sc. Student)
  • Josef Uyeda (Department of Biological Sciences)
  • Diego Sasso Porto (postdoc)
  • Sergei Tarasov (now at Finnish Museum of Natural History)

Phenoscape II Project

National Evolutionary Synthesis Center (NESCent) University of South Dakota University of Oregon (Zebrafish Information Network)
  • Todd Vision (also University of North Carolina at Chapel Hill)
  • Hilmar Lapp (now at Duke University, Center for Genomic and Computational Biology)
  • Jim Balhoff (now at RTI Intl.)
  • Prashanti Manda (now at University of North Carolina at Greensboro)
  • Paula Mabee
  • Wasila Dahdul
  • Alex Dececchi
Oregon Health & Science University
  • Melissa Haendel
University of Chicago Mouse Genome Informatics Cincinnati Children's Hospital Medical Center
  • Paul Sereno
  • Nizar Ibrahim
  • Judith Blake
  • Terry Hayamizu
  • Aaron Zorn (Xenbase)
  • Christina James-Zorn (Xenbase)
California Academy of Sciences University of Arizona Lawrence Berkeley National Labs
  • David Blackburn
  • Hong Cui
  • Zilong Chang
  • Chris Mungall

Phenoscape I Project

  • Paula Mabee, University of South Dakota
  • Monte Westerfield, Zebrafish Information Network and University of Oregon
  • Todd Vision, National Evolutionary Synthesis Center and University of North Carolina at Chapel Hill
  • Hilmar Lapp, National Evolutionary Synthesis Center
  • Jim Balhoff, National Evolutionary Synthesis Center
  • Wasila Dahdul, University of South Dakota
  • Peter Midford, National Evolutionary Synthesis Center

Advisory Board

SCATE Project

Members

  • Scott Chamberlain (rOpenSci)
  • Emily Jane McTavish (University of California, Merced)
  • Brian Sidlauskas (Oregon State University)
  • Pam Soltis (University of Florida)
  • Paul Thomas (University of Southern California)

Meetings

  • Advisory Board meeting on January 7, 2020, after the SSB 2020 meeting at University of Florida


Phenoscape II

Members

  • John Day-Richter (Google)
  • Brian K. Hall (Dalhousie University)
  • Cyndy Parr (Encyclopedia of Life) (2012-)
  • Paul Schofield (University of Cambridge)
  • Peter Vize (University of Calgary)
  • Alan Ruttenberg (University of Buffalo)

Meetings

Contributors

The following groups and individuals have contributed to Phenoscape ontology development, data curation, workshops, and data entry:

Phenoscape Contributors to the Uberon Anatomy Ontology

  • Wasila Dahdul, University of South Dakota
  • David Blackburn, California Academy of Sciences
  • T. Alexander Dececchi, University of South Dakota
  • Pasan Chinthana Fernando, University of South Dakota
  • Melissa Haendel, Oregon Health Sciences University
  • Terry Hayamizu, Mouse Genome Informatics
  • Nizar Ibrahim, University of Chicago
  • Laura Jackson, University of South Dakota
  • Paula Mabee, University of South Dakota
  • Chris Mungall, Lawrence Berkeley Labs

Teleost Anatomy Ontology (TAO) Contributors

  • Gloria Arratia, The University of Kansas
  • David Blackburn, University of Kansas
  • Miles Coburn, John Carroll University
  • Kevin Conway, St. Louis University
  • Wasila Dahdul, University of South Dakota
  • Mário de Pinna, Universidade de São Paulo
  • Alexander Diehl, University at Buffalo, The State University of New York
  • Jeff Engeman, University of South Dakota
  • Benjamin Frable, National Museum of Natural History, Smithsonian Institution
  • Terry Grande, Loyola University, Chicago
  • Melissa Haendel, OHSU
  • Brian Hall, Dalhousie University
  • Eric Hilton, Virginia Institute of Marine Science
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Paula Mabee, University of South Dakota
  • Richard Mayden, St. Louis University
  • Martin Ringwald, The Jackson Laboratory
  • Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
  • Erik Segerdell, OHSU
  • Brian Sidlauskas, Oregon State University
  • Sandrine Tercerie, Muséum National d'Histoire Naturelle
  • Ceri Van Slyke, Zebrafish Information Network
  • Richard Vari, National Museum of Natural History, Smithsonian Institution
  • Matt Vickaryous, University of Guelph
  • Jacqueline Webb, University of Rhode Island
  • Edward Wiley, The University of Kansas

Vertebrate and Teleost Taxonomy Ontology Contributors

  • John Alroy, Paleobiology Database
  • Nicolas Bailly, WorldFish Center, Philippines
  • Stan Blum, California Academy of Sciences
  • Miles Coburn, John Carroll University
  • Kevin Conway, St. Louis University
  • Wasila Dahdul, University of South Dakota
  • T. Alexander Dececchi, University of South Dakota
  • Bill Eschmeyer, California Academy of Sciences
  • Rainer Froese, Leibniz-Institute of Marine Sciences
  • Terry Grande, Loyola University, Chicago
  • Eric Hilton, Virginia Institute of Marine Science
  • Nizar Ibrahim, University of Chicago
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Richard Mayden, St. Louis University
  • Paul Sereno, University of Chicago

Vertebrate Skeletal Anatomy Ontology (VSAO) Contributors

  • James P. Balhoff, National Evolutionary Synthesis Center
  • David C. Blackburn, California Academy of Sciences
  • Wasila Dahdul, University of South Dakota
  • Alexander D. Diehl, University at Buffalo, The State University of New York
  • Melissa A. Haendel, Oregon Health & Science University
  • Brian K. Hall, Dalhousie University
  • Terry Hayamizu, The Jackson Laboratory
  • Nizar Ibrahim, University of Chicago
  • Hilmar Lapp, National Evolutionary Synthesis Center
  • John G. Lundberg, The Academy of Natural Sciences
  • Paula M. Mabee, University of South Dakota
  • Christopher J. Mungall, Lawrence Berkeley National Laboratory
  • Martin Ringwald, The Jackson Laboratory
  • Erik Segerdell, Oregon Health & Science University
  • Paul Sereno, University of Chicago
  • Ceri E. Van Slyke, Zebrafish Information Network
  • Matthew K. Vickaryous, University of Guelph
  • Monte Westerfield, Zebrafish Information Network and University of Oregon
  • Christina James Zorn, Xenbase

Curators (Data Annotation)

  • Bruno Chanet, Muséum National d'Histoire Naturelle
  • Miles Coburn, John Carroll University
  • Sonia Crichigno, Centro Regional Universitario Bariloche, (Univ. Nac. del Comahue), Argentina
  • Wasila Dahdul, University of South Dakota
  • T. Alexander Dececchi, University of South Dakota
  • Pasan Chinthana Fernando, University of South Dakota
  • Jeff Engeman, University of South Dakota
  • Benjamin Frable, National Museum of Natural History, Smithsonian Institution
  • Terry Grande, Loyola University, Chicago
  • Eric Hilton, Virginia Institute of Marine Science
  • Nizar Ibrahim, University of Chicago
  • Laura Jackson, University of South Dakota
  • Tova Just, Bryn Mawr College
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Paula Mabee, University of South Dakota
  • Richard Mayden, St. Louis University
  • Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
  • Sandrine Tercerie, Muséum National d'Histoire Naturelle

Phenoscape Workshop Participants & Contributors

  • Arhat Abzhanov, Harvard University
  • Gloria Arratia, The University of Kansas
  • Michael Ashburner, University of Cambridge
  • Jim Balhoff, National Evolutionary Synthesis Center
  • Rüdiger Bieler, Field Museum, Chicago
  • David Blackburn, University of Kansas
  • Judith Blake, The Jackson Laboratory
  • Stan Blum, California Academy of Sciences
  • Miles Coburn, John Carroll University
  • Kevin Conway, St. Louis University
  • Quentin Cronk, The University of British Columbia
  • Wasila Dahdul, University of South Dakota
  • Mário de Pinna, Universidade de São Paulo
  • Andy Deans, North Carolina State University
  • Alexander Diehl, University at Buffalo, The State University of New York
  • Torsten Dikow, Field Museum, Chicago
  • Jeff Engeman, University of South Dakota
  • George Gkoutos, University of Cambridge
  • Lance Grande, Field Museum, Chicago
  • Terry Grande, Loyola University, Chicago
  • Melissa Haendel, Zebrafish Information Network
  • Brian Hall, Dalhousie University
  • Eric Hilton, Virginia Institute of Marine Science
  • Robert Ho, University of Chicago
  • Hopi Hoekstra, Harvard University
  • Hans Hofmann, University of Texas at Austin
  • Elizabeth Jockusch, Univesity of Connecticut
  • Elizabeth Kellogg, University of Missouri, St. Louis
  • Chuck Kimmel, University of Oregon
  • Cartik Kothari, National Evolutionary Synthesis Center
  • Hilmar Lapp, National Evolutionary Synthesis Center
  • Suzanna Lewis, Berkeley Bioinformatics and Ontology Project
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Paula Mabee, University of South Dakota
  • Anne Maglia, Missouri University of Science and Technology
  • Joanna Mandecki, University of Chicago
  • Austin Mast, Florida State University
  • Richard Mayden, St. Louis University
  • Charlene McCord, University of Chicago
  • Peter Midford, National Evolutionary Synthesis Center
  • Chris Mungall, Berkeley Bioinformatics and Ontology Project
  • Vicky Prince, University of Chicago
  • Martin Ramirez, Museo Argentino de Ciencias Naturales "Bernardino Rivadavia," Argentina
  • Sue Rhee, Carnegie Institution
  • Martin Ringwald, The Jackson Laboratory
  • Nelson Rios, Tulane University
  • Callum Ross, University of Chicago
  • Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
  • Erik Segerdell, University of Calgary
  • Paul Sereno, University of Chicago
  • Brian Sidlauskas, Oregon State University
  • Barry Smith, University at Buffalo
  • David Stern, Princeton University
  • Margaret Thayer, Field Museum, Chicago
  • Ceri Van Slyke, Zebrafish Information Network
  • Matt Vickaryous, University of Guelph
  • Todd Vision, National Evolutionary Synthesis Center and University of North Carolina at Chapel Hill
  • Peter Vize, University of Calgary
  • Gunter Wagner, Yale University
  • Michael Wallinga, University of South Dakota
  • Nicole Washington, Lawrence Berkeley National Lab
  • Monte Westerfield, Zebrafish Information Network and University of Oregon
  • Mark Westneat, Field Museum, Chicago
  • Edward Wiley, The University of Kansas
  • Matt Yoder, North Carolina State University

Software testing

  • Angel Amores, University of Oregon
  • Carole Baldwin, Smithsonian National Museum of Natural History
  • Susan Bassham, University of Oregon
  • Judith Blake, The Jackson Laboratory
  • Miles Coburn, John Carroll University
  • William Cresko, University of Oregon
  • April DeLaurier, University of Oregon
  • Jeff Engeman, University of South Dakota
  • Vladimir Gapeyev, National Evolutionary Synthesis Center
  • Terry Grande, Loyola University, Chicago
  • Melissa Haendel, Zebrafish Information Network
  • Eric Hilton, Virginia Institute of Marine Science
  • Ryan Kerney, Dalhousie University
  • Suzanna Lewis, Berkeley Bioinformatics and Ontology Project
  • Daniel Lumbantobing, George Washington University
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Anne Maglia, Missouri University of Science and Technology
  • Richard Mayden, St. Louis University
  • Julie Mounts, Smithsonian National Museum of Natural History
  • Conor O'Brien, University of Oregon
  • Lynne Parenti, Smithsonian National Museum of Natural History
  • Rafael de Sá, University of Richmond
  • Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
  • Brian Sidlauskas, Oregon State University
  • Jiakun Song, Smithsonian National Museum of Natural History
  • Jared Talbot, University of Oregon
  • Sandrine Tercerie, Muséum National d'Histoire Naturelle
  • Tom Titus, University of Oregon
  • Linda Trueb, University of Kansas
  • Ceri Van Slyke, Zebrafish Information Network
  • David Wake, University of California, Berkeley
  • Marvalee Wake, University of California, Berkeley
  • Matt Yoder, North Carolina State University

Students

  • Alex Ahearn, Duke University
  • Alyssa Block, University of South Dakota
  • Jordan Catlett, University of South Dakota
  • Sonia Crichigno, Centro Regional Universitario Bariloche, (Univ. Nac. del Comahue), Argentina
  • Jeff Engeman, University of South Dakota
  • Pasan Chinthana Fernando, University of South Dakota
  • Benjamin Frable, National Museum of Natural History, Smithsonian Institution
  • Char Green, University of South Dakota
  • Ericka Grey, University of South Dakota
  • Laura Jackson, University of South Dakota
  • Tova Just, Bryn Mawr College
  • Jun Hong Kim, Duke University
  • Jonathan Lee, Duke University
  • Leah Mabee, University of South Dakota
  • Callie Mao, Duke University
  • Mtakai Ngara, International Institute of Tropical Agriculture, Nairobi, Kenya
  • Carla Perez, Duke University
  • Carin Rambow, University of South Dakota
  • Du Rui, University of South Dakota
  • Brad Schanche, University of South Dakota
  • Michael Wallinga, University of South Dakota
  • Hong Xu, Duke University
  • Lucy Zhang, Duke University

Groups

Data sources

Funding

The SCATE project is funded by NSF collaborative grants DBI-1661456 (Duke University), DBI-1661529 (Virginia Tech), DBI-1661516 (University of South Dakota), and DBI-1661356 (UNC Chapel Hill and RENCI). The Phenoscape II project was funded by NSF collaborative grants DBI-1062404 and DBI-1062542 grant and the National Evolutionary Synthesis Center (NESCent), NSF #EF-0905606. Its predecessor, the Phenoscape I project, was funded by NSF grant BDI-0641025, and supported by NESCent, NSF #EF-0423641.

Retrieved from "https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Acknowledgments&oldid=12140"