Difference between revisions of "Software roadmap"
From phenoscape
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* '''[complete]''' Choose museum code from pick list when entering specimen IDs. | * '''[complete]''' Choose museum code from pick list when entering specimen IDs. | ||
* '''[complete]''' Make DAG view work browsing entire ontology, with drag-and-drop to fields. | * '''[complete]''' Make DAG view work browsing entire ontology, with drag-and-drop to fields. | ||
| + | * '''[complete]''' Allow user to edit field values directly in the table (especially for Specimen list). | ||
* Include two preset docking interface configurations: taxon list editing and annotation editing | * Include two preset docking interface configurations: taxon list editing and annotation editing | ||
* Allow user to create multiple, temporary annotation template lists while editing. | * Allow user to create multiple, temporary annotation template lists while editing. | ||
| − | + | ||
===Post-Data Jamboree revision -- May 2008=== | ===Post-Data Jamboree revision -- May 2008=== | ||
Revision as of 15:24, 8 April 2008
Contents
Phenotype annotation editor
Enhance Phenote with necessary features to be productively and efficiently used by curators -- March 2008 (first Data Jamboree)
- [complete] Initial Phenote configuration for PhenoScape data model.
- [complete] Specimen List window allowing curators to repeatedly choose one or more taxa for EQ annotation.
- [complete] Phylogeny view for selecting taxa to annotate.
- [complete] Search field to filter table rows.
- [complete] Ontology mode in search field for more advanced table filtering.
- [complete] Configuration for editing homology annotations.
- [complete] Transition PhenoScape components to Phenote 2 docking windows interface.
- [complete] Use standard menus and keyboard shortcuts for Open, Save, Quit, Cut, Copy, Paste, etc.
- [complete] Improved document saving functionality. User should be able to quickly save a document to the same file it was opened from.
- [complete] Rework Specimen List as Taxon List: each taxon has multiple specimens which can be picked from during annotation as supporting evidence.
- [complete] Choose museum code from pick list when entering specimen IDs.
- [complete] Make DAG view work browsing entire ontology, with drag-and-drop to fields.
- [complete] Allow user to edit field values directly in the table (especially for Specimen list).
- Include two preset docking interface configurations: taxon list editing and annotation editing
- Allow user to create multiple, temporary annotation template lists while editing.
Post-Data Jamboree revision -- May 2008
- move to OBO-annotations data model [1]
Unscheduled features
- Annotation using temporary terms, when an appropriate term is not available in an ontology. Ability to update these terms to official term once it is available.
- Create lookup-enabled Publication field (enter DOI or PMID).
- Character matrix view of annotations: Taxon by Entity+Attribute.
Phenote integration with PhenoScape web application and database
- Determine whether to integrate standalone Phenote application with web database, or migrate components into web application.
Ontology editor
Curators begin by using OBO-Edit to view and edit project ontologies -- August 2007
- [complete] Curators are using OBO-Edit successfully.
