Difference between revisions of "Data Jamboree 2"
From phenoscape
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==Location and Date== | ==Location and Date== | ||
| − | '''Venue: | + | '''Venue: <span class="plainlinks">[http://www.custerresorts.com/sylvan-lake-lodge-custer-state-park-resort/ Sylvan Lake Lodge]</span>, South Dakota |
'''Date:''' September 27-October 1, 2008 | '''Date:''' September 27-October 1, 2008 | ||
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Purpose: | Purpose: | ||
| − | + | # Evaluation of prototypes for web user interface | |
| − | + | # Character data entry by experts; introduce new curators to Phenote and data entry; test/enhance curation consistency; further refine curation interface | |
| − | + | # Project personnel meeting | |
==Agenda== | ==Agenda== | ||
| − | Draft at ''[[Data_Jamboree_2/ | + | Draft at ''[[Data_Jamboree_2/Agenda]]'' for the program for each day. |
==Resources== | ==Resources== | ||
Revision as of 01:48, 27 July 2008
Second Morphology Data Jamboree
A workshop hosted by the National Evolutionary Synthesis Center (NESCent).
Contents
Location and Date
Venue: Sylvan Lake Lodge, South Dakota
Date: September 27-October 1, 2008
Organizers: Paula Mabee, Monte Westerfield, Todd Vision, and Hilmar Lapp
Introduction
Purpose:
- Evaluation of prototypes for web user interface
- Character data entry by experts; introduce new curators to Phenote and data entry; test/enhance curation consistency; further refine curation interface
- Project personnel meeting
Agenda
Draft at Data_Jamboree_2/Agenda for the program for each day.
Resources
For curators:
- Guide to Character Annotation
- Entering a taxon list
- Group exercise instructions
- Phenote User Guide (this also contains detailed instructions for downloading and running Phenote)
- Resources for curators
Logistics
Participants
Members of the project team are in bold font.
| Name | Institution |
|---|---|
| Jim Balhoff | NESCent |
| Miles Coburn | John Carroll University |
| Wasila Dahdul | Department of Ichthyology, Academy of Natural Sciences |
| Hilmar Lapp | NESCent |
| John Lundberg | Department of Ichthyology, Academy of Natural Sciences |
| Paula Mabee | University of South Dakota |
| Peter Midford | Dept. of Ecology and Evolutionary Biology, University of Kansas |
| Todd Vision | NESCent, and Department of Biology, University of North Carolina at Chapel Hill |
| Monte Westerfield | Zebrafish Information Network (ZFIN) and Institute of Neuroscience, University of Oregon |
Reading
- We use the tag "phenoscape" on Connotea. Everyone is welcome to suggest references by using this tag.
- Relevant manuscripts by members of the project team:
- Mabee PM, Ashburner M, Cronk Q, Gkoutos GV, Haendel M, Segerdell E, Mungall C, and Westerfield M. Phenotype ontologies: the bridge between genomics and evolution. Trends Ecol Evol 2007 Jul; 22(7) 345-50. doi:10.1016/j.tree.2007.03.013
- Mabee PM, Arratia G, Coburn M, Haendel M, Hilton EJ, Lundberg JG, Mayden RL, Rios N, and Westerfield M. Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish. J Exp Zoolog B Mol Dev Evol 2007 Jun 28. doi:10.1002/jez.b.21181
- Haendel, M.A., Neuhaus, F., Osumi-Sutherland, D.S., Mabee, P.M., Mejino J.L.V., Mungall, C.J., and Smith, B. (2008) CARO - The Common Anatomy Reference Ontology. In: Albert Burger, Duncan Davidson and Richard Baldock (Editors): Anatomy Ontologies for Bioinformatics: Principles and Practice. ISBN 978-1-84628-884-5.
Papers for Annotation
- Miles Coburn
