Difference between revisions of "Knowledgebase Reports"
From phenoscape
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** [http://kb-dev.phenoscape.org/OBD-WS/report/count/taxa/annotated?query=%7B%22phenotype%22%3A%5B%7B%22entity%22%3A%7B%22id%22%3A%22TAO%3A0001161%22%2C%22including_parts%22%3A%20true%7D%7D%5D%7D pectoral fin and parts only] | ** [http://kb-dev.phenoscape.org/OBD-WS/report/count/taxa/annotated?query=%7B%22phenotype%22%3A%5B%7B%22entity%22%3A%7B%22id%22%3A%22TAO%3A0001161%22%2C%22including_parts%22%3A%20true%7D%7D%5D%7D pectoral fin and parts only] | ||
* [http://kb-dev.phenoscape.org/OBD-WS/report/count/phenotypes/curated Count of EQ statements curated (state to phenotype links)] | * [http://kb-dev.phenoscape.org/OBD-WS/report/count/phenotypes/curated Count of EQ statements curated (state to phenotype links)] | ||
| − | * Count of distinct phenotypes used in taxon annotations | + | * [http://kb-dev.phenoscape.org/OBD-WS/report/count/phenotypes/annotated Count of distinct phenotypes used in taxon annotations] |
| − | ** pelvic fin and parts only | + | ** [http://kb-dev.phenoscape.org/OBD-WS/report/count/phenotypes/annotated?query=%7B%22phenotype%22%3A%5B%7B%22entity%22%3A%7B%22id%22%3A%22TAO%3A0001184%22%2C%22including_parts%22%3A%20true%7D%7D%5D%7D pelvic fin and parts only] |
| − | ** pectoral fin and parts only | + | ** [http://kb-dev.phenoscape.org/OBD-WS/report/count/phenotypes/annotated?query=%7B%22phenotype%22%3A%5B%7B%22entity%22%3A%7B%22id%22%3A%22TAO%3A0001161%22%2C%22including_parts%22%3A%20true%7D%7D%5D%7D pectoral fin and parts only] |
* Count of curated phenotype assertions (taxon-phenotype annotations) | * Count of curated phenotype assertions (taxon-phenotype annotations) | ||
** pelvic fin and parts only | ** pelvic fin and parts only | ||
Revision as of 16:36, 22 July 2010
Contents
Reports on production Phenoscape KB
This contains consistency-checked and author-checked files (from 'phenex-files'). It is updated irregularly (every 1-3 months).
- Relational qualities without related entities
- Monadic qualities with related entities
- Characters with only one annotated state
- Presence/absence characters without both states
Reports on kb-staging
This contains files that are going into production database (from 'phenex-files'); some are updated daily by curators. It is updated nightly.
- Relational qualities without related entities
- Monadic qualities with related entities
- Characters with only one annotated state
- Presence/absence characters without both states
Reports on kb-extra
This database is equivalent to staging but also includes Sandrine's data files and all incomplete files ('incomplete-files' + 'phenex-files'). It is updated nightly.
- Relational qualities without related entities
- Monadic qualities with related entities
- Characters with only one annotated state
- Presence/absence characters without both states
Reports on kb-dev
This database is used for active development and may often be broken. It should not be relied upon for everyday use.
- Date on which these data were loaded
- Count of annotated publications, by higher level taxon
- Count of all published characters
- Count of all annotated characters
- Count of all published character states
- Count of all annotated character states
- Count of publication taxa (OTUs) across all publications
- Count of annotated taxa (valid taxa, i.e. terms in TTO)
- Count of EQ statements curated (state to phenotype links)
- Count of distinct phenotypes used in taxon annotations
- Count of curated phenotype assertions (taxon-phenotype annotations)
- pelvic fin and parts only
- pectoral fin and parts only
- Count of distinct phenotype assertions (taxon-phenotype annotations)
- pelvic fin and parts only
- pectoral fin and parts only
