Difference between revisions of "WebHints"
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'''About Phenotypes''' | '''About Phenotypes''' | ||
| − | + | See additional information about phenotypes (Entities, Qualities, and optionally Relational Entities). | |
</div> | </div> | ||
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'''Find a Specific Term''' | '''Find a Specific Term''' | ||
| − | + | Search using any valid term (taxon, gene, etc.) in the Knowledgebase. '''You must choose a matched value from the drop-down list before you can search.''' | |
</div> | </div> | ||
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'''Browse All Phenotypes''' | '''Browse All Phenotypes''' | ||
| − | View all phenotypes used within annotations. Narrow results | + | View all phenotypes used within annotations. Narrow results by taxa, anatomical entity, phenotypic quality, or gene classification. |
</div> | </div> | ||
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'''Query Phenotype Annotations To Taxa''' | '''Query Phenotype Annotations To Taxa''' | ||
| − | + | Find '''phenotypes''' associated with particular '''taxa'''; filter by publication. | |
</div> | </div> | ||
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'''Query Phenotype Annotations To Genes''' | '''Query Phenotype Annotations To Genes''' | ||
| − | + | Find '''phenotypes''' associated with particular '''genes'''. | |
</div> | </div> | ||
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'''Query Taxa''' | '''Query Taxa''' | ||
| − | + | Find the '''taxa''' associated with a particular phenotype or publication. | |
</div> | </div> | ||
| Line 85: | Line 85: | ||
'''Query Genes''' | '''Query Genes''' | ||
| − | + | Find a list of '''genes''' associated with a particular phenotype. | |
</div> | </div> | ||
| − | <div id=" | + | <div id="QueryComparativePublications" style="border: 2px dashed silver;"> |
'''Query Comparative Publications''' | '''Query Comparative Publications''' | ||
| − | Find | + | Find '''publications''' that contain descriptions of particular taxa or phenotypes. |
</div> | </div> | ||
| − | <div id=" | + | <div id="QueryPhenotyes" style="border: 2px dashed silver;"> |
'''Query Phenotypes''' | '''Query Phenotypes''' | ||
| − | + | Find a list of '''phenotypes''' associated with a particular taxon, gene, or publication. | |
</div> | </div> | ||
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'''Visualize Phenotypic Profile Tree''' | '''Visualize Phenotypic Profile Tree''' | ||
| − | + | Visualize the extent to which a specified set of phenotypes is exhibited within and between taxa. | |
</div> | </div> | ||
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<div id="VisualizePhenotypicVariationTree" style="border: 2px dashed silver;"> | <div id="VisualizePhenotypicVariationTree" style="border: 2px dashed silver;"> | ||
'''Visualize Phenotypic Variation Tree''' | '''Visualize Phenotypic Variation Tree''' | ||
| − | + | Visualize the taxonomic distribution of a specified phenotype. | |
| − | |||
</div> | </div> | ||
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'''Apply higher taxon annotations to all included species''' | '''Apply higher taxon annotations to all included species''' | ||
| − | Phenotypes annotated to higher | + | Phenotypes annotated to a higher taxon (e.g. all Euteleosts) are assumed to apply to all organisms within that group. For example, searching for 'basihyal bone absent' would return a list of all catfish (Siluriformes) species because this phenotype has been annotated at the level of the Siluriformes. |
</div> | </div> | ||
Revision as of 19:44, 1 November 2011
This page is an easily editable source for help popups in the Phenoscape web UI. Each entry below should be contained in a block element (DIV) with a mnemonic ID.
About Phenotypes
See additional information about phenotypes (Entities, Qualities, and optionally Relational Entities).
Find a Specific Term
Search using any valid term (taxon, gene, etc.) in the Knowledgebase. You must choose a matched value from the drop-down list before you can search.
Browse All Phenotypes
View all phenotypes used within annotations. Narrow results by taxa, anatomical entity, phenotypic quality, or gene classification.
Browse Taxa
Browse the taxonomic hierarchy and view detailed information about each term.
Browse Anatomical Entities
Browse the anatomy ontology hierarchy and view detailed information about each term.
Browse Phenotypic Qualities
Browse the phenotypic quality ontology hierarchy and view detailed information about each term.
Browse Genes
TODO
Browse Comparative Publications
TODO
Query Phenotype Annotations To Taxa
Find phenotypes associated with particular taxa; filter by publication.
Query Phenotype Annotations To Genes
Find phenotypes associated with particular genes.
Query Taxa
Find the taxa associated with a particular phenotype or publication.
Query Genes
Find a list of genes associated with a particular phenotype.
Query Comparative Publications
Find publications that contain descriptions of particular taxa or phenotypes.
Query Phenotypes
Find a list of phenotypes associated with a particular taxon, gene, or publication.
Visualize Phenotypic Profile Tree
Visualize the extent to which a specified set of phenotypes is exhibited within and between taxa.
Visualize Phenotypic Variation Tree Visualize the taxonomic distribution of a specified phenotype.
Apply higher taxon annotations to all included species
Phenotypes annotated to a higher taxon (e.g. all Euteleosts) are assumed to apply to all organisms within that group. For example, searching for 'basihyal bone absent' would return a list of all catfish (Siluriformes) species because this phenotype has been annotated at the level of the Siluriformes.
Add to workspace
When viewing query results, check the box to the left of any result to add it to the workspace. On the workspace page, you can combine saved items into new queries.
Add more entries here...
