Difference between revisions of "Term Definitions and References"
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| + | Term definitions are important because they facilitate consistent use of a term in annotation of disparate data types by different curators. The TAO follows the convention that each term should have a textual definition of the genus-differentia form, i.e., a subclass structure of A is an A that has properties X and Y that distinguish it from the other subclass structures of A (Smith et al. 2007). | ||
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| + | The entity term B is defined by its membership in higher category entity A and distinguished from its sibling terms by characteristic X. Entity definitions are primarily based on structural criteria. Distinguishing characteristics (X) can include the location, shape, and a list of the parts of the entity. | ||
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| + | The following are examples of genus-differentia definitions in the TAO: | ||
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| + | Antorbital: Dermal bone that is located on the anterior margin of the infraorbital series, dorsal to the first infraorbital and lateral to the nasal bone. | ||
| + | Dentary: Dermal bone that forms the anterolateral part of the lower jaw. | ||
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| + | In example 1, the definition mentions the parent dermal bone of the term antorbital, followed by the characteristics that differentiate antorbital from all other dermal bones. | ||
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| + | Comments: Taxonomic statements to be applied to a structure, which are not universals, are recorded in the comment field for that term. For example, Weberian apparatus (TAO: 0001188 ) has the following definition: “Anatomical cluster that consists of the modified anteriormost vertebrae and associated structures that connect the swim bladder to the inner ear.,” and the following is recorded in the comment field: “Vertebra 1-4, and sometimes vertebra 5 in some catfishes, are part of the Weberian apparatus. Weberian apparatus is present in Otophysi.” Here the statements about components of the Weberian apparatus do not universally apply to all teleosts, but is included in the comment field because this information is potentially helpful to the ontology user for general understanding and for identifying structures. | ||
Revision as of 16:01, 6 January 2012
Genus differentia definition Term definitions are important because they facilitate consistent use of a term in annotation of disparate data types by different curators. The TAO follows the convention that each term should have a textual definition of the genus-differentia form, i.e., a subclass structure of A is an A that has properties X and Y that distinguish it from the other subclass structures of A (Smith et al. 2007).
The entity term B is defined by its membership in higher category entity A and distinguished from its sibling terms by characteristic X. Entity definitions are primarily based on structural criteria. Distinguishing characteristics (X) can include the location, shape, and a list of the parts of the entity.
The following are examples of genus-differentia definitions in the TAO:
Antorbital: Dermal bone that is located on the anterior margin of the infraorbital series, dorsal to the first infraorbital and lateral to the nasal bone. Dentary: Dermal bone that forms the anterolateral part of the lower jaw.
In example 1, the definition mentions the parent dermal bone of the term antorbital, followed by the characteristics that differentiate antorbital from all other dermal bones.
Comments: Taxonomic statements to be applied to a structure, which are not universals, are recorded in the comment field for that term. For example, Weberian apparatus (TAO: 0001188 ) has the following definition: “Anatomical cluster that consists of the modified anteriormost vertebrae and associated structures that connect the swim bladder to the inner ear.,” and the following is recorded in the comment field: “Vertebra 1-4, and sometimes vertebra 5 in some catfishes, are part of the Weberian apparatus. Weberian apparatus is present in Otophysi.” Here the statements about components of the Weberian apparatus do not universally apply to all teleosts, but is included in the comment field because this information is potentially helpful to the ontology user for general understanding and for identifying structures.
