|
|
| (65 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | ==Data loader==
| |
| − | A data loader application to refresh the data in the Phenoscape database on a daily basis is under development. The application is being developed as a Perl module which:
| |
| − | # Downloads curated NeXML files from the Phenoscape SVN repositories
| |
| − | # Drops and recreates the database
| |
| − | # Loads the requisite ontologies into the database
| |
| − | # Loads the data from the curated NeXML files into the database, and
| |
| − | # Invokes the OBD reasoner to elicit implicit information from the data and adds them to the database
| |
| | | | |
| − | ==Web services==
| |
| − | Each service may support multiple media types. The desired media type can be specified by appending <code>?media=json</code> or similar to the request URL. URI specifications are defined using [http://bitworking.org/projects/URI-Templates/draft-gregorio-uritemplate-00.html URI Templates].
| |
| − | ===Term info===
| |
| − | '''URI'''
| |
| | | | |
| − | <BASE URI>/term/{term_id}
| + | [[Category:Informatics]] |
| − | | |
| − | '''Returns'''
| |
| − | | |
| − | JSON:
| |
| − | <javascript>
| |
| − | {
| |
| − | "id" : "TAO:0001700",
| |
| − | "name" : "caudal-fin stay",
| |
| − | "definition" : "Bone that is located anterior to the caudal procurrent rays. Caudal fin stays are unpaired bone."
| |
| − | "parents" :
| |
| − | [
| |
| − | {
| |
| − | "relation" : "OBO_REL:is_a",
| |
| − | "id" : "TAO:0001514",
| |
| − | "name" : "bone"
| |
| − | },
| |
| − | {
| |
| − | "relation" : "OBO_REL:part_of",
| |
| − | "id" : "TAO:0000862",
| |
| − | "name" : "caudal fin skeleton"
| |
| − | }
| |
| − | ],
| |
| − | "children" : [] // if there are children, this content should be in the same format as the parents list
| |
| − | }
| |
| − | // how should xrefs, etc. be represented, property_value definitions?
| |
| − | </javascript>
| |
| − | | |
| − | OWL-RDF:
| |
| − | | |
| − | Todo...
| |
| − | | |
| − | If there is no term with the given ID, the service should return "404 Not Found".
| |
| − | | |
| − | ====Handling of anonymous post-compositions====
| |
| − | | |
| − | ===Autocomplete===
| |
| − | '''URI'''
| |
| − | | |
| − | | |
| − | | |
| − | '''Returns'''
| |
| − | <BASE URI>/term/search/{text}?name={true|false}&syn={true|false}&def={true|false}
| |
| − | | |
| − | If there are no terms matching the given input, a document should still be returned, containing an empty results list.
| |
