Difference between revisions of "Acknowledgments"

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The following individuals have contributed to Phenoscape ontology development, data curation, workshops, and data entry:
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== Project team ==
  
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=== Teleost Anatomy Ontology Contributors ===
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=== SCATE Project ===
  
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Gloria Arratia, The University of Kansas
+
{| width="90%"
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|- align="left" valign="top" style="font-weight: bold;"
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| style="width: 48%;" | University of North Carolina at Chapel Hill
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| style="width: 48%;" | University of South Dakota
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|- valign="top"
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|
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* [http://visionlab.web.unc.edu/ Todd Vision] (Department of Biology)
 +
* [http://www.mendeley.com/profiles/jim-balhoff/ Jim Balhoff] (Renaissance Computing Institute)
 +
* Shalki Shrivastava (Renaissance Computing Institute)
 +
|
 +
* [https://www.usd.edu/faculty-and-staff/Paula-Mabee Paula Mabee] (Department of Biology)
 +
* [https://orcid.org/0000-0003-3162-7490 Wasila Dahdul] (Department of Biology)
 +
|
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|- style="height: 5px;"
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|
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|- align="left" style="font-weight: bold; "
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| Duke University
 +
| Virginia Tech
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|- valign="top"
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|
 +
* [[User:Hilmar| Hilmar Lapp]] (Center for Genomic and Computational Biology)
 +
* Amandeep Rathee (M.Sc. Student)
 +
|
 +
* [http://www.uyedalab.com/ Josef Uyeda] (Department of Biological Sciences)
 +
* Diego Sasso Porto (postdoc)
 +
* Sergei Tarasov (now at Finnish Museum of Natural History)
 +
|}
  
−
Miles Coburn, John Carroll University
+
=== Phenoscape II Project ===
  
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Kevin Conway, St. Louis University
+
{| width="90%"
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|- align="left" valign="top" style="font-weight: bold;"
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| style="width: 33%;" | National Evolutionary Synthesis Center (NESCent)
 +
| style="width: 33%;" | University of South Dakota
 +
| style="width: 33%;" | University of Oregon (Zebrafish Information Network)
 +
|- valign="top"
 +
| rowspan="4" |
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* [http://visionlab.web.unc.edu/ Todd Vision] (also University of North Carolina at Chapel Hill)
 +
* [[User:Hilmar| Hilmar Lapp]] (now at Duke University, Center for Genomic and Computational Biology)
 +
* [http://www.mendeley.com/profiles/jim-balhoff/ Jim Balhoff] (now at RTI Intl.)
 +
* Prashanti Manda (now at University of North Carolina at Greensboro)
 +
|
 +
* Paula Mabee
 +
* Wasila Dahdul
 +
* Alex Dececchi
 +
| rowspan="4" |
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* [http://zfin.org/cgi-bin/webdriver?MIval=aa-persview.apg&OID=ZDB-PERS-960805-676 Monte Westerfield]
 +
* Yvonne Bradford
 +
* Ceri Van Slyke
 +
|- style="height: 1px;"
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|
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|- align="left" style="font-weight: bold; "
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| Oregon Health & Science University
 +
|- valign="top"
 +
|
 +
* Melissa Haendel
 +
|- style="height: 10px;"
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|
 +
|- align="left" style="font-weight: bold; "
 +
| University of Chicago || Mouse Genome Informatics || Cincinnati Children's Hospital Medical Center
 +
|- valign="top"
 +
|
 +
* Paul Sereno
 +
* Nizar Ibrahim
 +
|
 +
* Judith Blake
 +
* Terry Hayamizu
 +
|
 +
* Aaron Zorn (Xenbase)
 +
* Christina James-Zorn (Xenbase)
 +
|- style="height: 10px;"
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|
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|- align="left" style="font-weight: bold; "
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| California Academy of Sciences || University of Arizona || Lawrence Berkeley National Labs ||
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|- valign="top"
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|
 +
* David Blackburn
 +
|
 +
* Hong Cui
 +
* Zilong Chang
 +
|
 +
* Chris Mungall
 +
|}
  
−
Wasila Dahdul, University of South Dakota
+
=== Phenoscape I Project ===
  
−
Mário de Pinna, Universidade de São Paulo
+
* Paula Mabee, University of South Dakota
 +
* Monte Westerfield, Zebrafish Information Network and University of Oregon
 +
* Todd Vision, National Evolutionary Synthesis Center and University of North Carolina at Chapel Hill
 +
* Hilmar Lapp, National Evolutionary Synthesis Center
 +
* Jim Balhoff, National Evolutionary Synthesis Center
 +
* Wasila Dahdul, University of South Dakota
 +
* Peter Midford, National Evolutionary Synthesis Center
  
−
Jeff Engemen, University of South Dakota
+
==Advisory Board==
  
−
Terry Grande, Loyola University, Chicago
+
=== SCATE Project ===
 +
'''Members'''
 +
* Scott Chamberlain (rOpenSci)
 +
* Emily Jane McTavish (University of California, Merced)
 +
* Brian Sidlauskas (Oregon State University)
 +
* Pam Soltis (University of Florida)
 +
* Paul Thomas (University of Southern California)
  
−
Melissa Haendel, Zebrafish Information Network
+
'''Meetings'''
 +
* Advisory Board meeting on January 7, 2020, after the SSB 2020 meeting at University of Florida
  
−
Brian Hall, Dalhousie University
 
  
−
Eric Hilton, Virginia Institute of Marine Science
+
=== Phenoscape II ===
 +
'''Members'''
 +
* John Day-Richter (Google)
 +
* Brian K. Hall (Dalhousie University)
 +
* Cyndy Parr (Encyclopedia of Life) (2012-)
 +
* Paul Schofield (University of Cambridge)
 +
* Peter Vize (University of Calgary)
 +
* Alan Ruttenberg (University of Buffalo)
  
−
John Lundberg, The Academy of Natural Sciences, Philadelphia
+
'''Meetings'''
 +
*  [[WG:Advisory Board Meeting 2013-12-12| Advisory Board meeting on Dec. 12, 2013]]. (by conference call): [[Media:Phenoscape_Dec_2013_AB_notes.pdf| agenda and notes]]
 +
* [[WG:Advisory Board Meeting 2012-12-04| Advisory Board meeting on Dec. 4, 2012]]. (by conference call): [[Media:Phenoscape_AB_Dec2012_minutes.pdf| agenda and notes]]
 +
* Advisory Board meeting (face to face): Friday, April 27, 2012; Phenoscape project meeting will precede this on April 25, 26
 +
* [[WG:All-Hands_Meeting_2011-11-11| Advisory Board meeting on Nov. 11, 2011]] (by conference call):  [http://docs.google.com/document/d/1oE9Mp-UVu6r-Ci7G3EHTRaBuXsapyqm7DQ-Q0FjwCyo/edit?hl=en_US agenda] and [[Media:ABmeeting 2011-11-11 notes.pdf| notes]]
  
−
Paula Mabee, University of South Dakota
+
==Contributors==
 +
The following groups and individuals have contributed to Phenoscape ontology development, data curation, workshops, and data entry:
  
−
Richard Mayden, St. Louis University
+
===Phenoscape Contributors to the Uberon Anatomy Ontology===
 +
* Wasila Dahdul, University of South Dakota
 +
* David Blackburn, California Academy of Sciences
 +
* T. Alexander Dececchi, University of South Dakota
 +
* Pasan Chinthana Fernando, University of South Dakota
 +
* Melissa Haendel, Oregon Health Sciences University
 +
* Terry Hayamizu, Mouse Genome Informatics
 +
* Nizar Ibrahim, University of Chicago
 +
* Laura Jackson, University of South Dakota
 +
* Paula Mabee, University of South Dakota
 +
* Chris Mungall, Lawrence Berkeley Labs
  
−
Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
+
===Teleost Anatomy Ontology (TAO) Contributors===
 +
* Gloria Arratia, The University of Kansas
 +
* David Blackburn, University of Kansas
 +
* Miles Coburn, John Carroll University
 +
* Kevin Conway, St. Louis University
 +
* Wasila Dahdul, University of South Dakota
 +
* Mário de Pinna, Universidade de São Paulo
 +
* Alexander Diehl, University at Buffalo, The State University of New York
 +
* Jeff Engeman, University of South Dakota
 +
* Benjamin Frable, National Museum of Natural History, Smithsonian Institution
 +
* Terry Grande, Loyola University, Chicago
 +
* Melissa Haendel, OHSU
 +
* Brian Hall, Dalhousie University
 +
* Eric Hilton, Virginia Institute of Marine Science
 +
* John Lundberg, The Academy of Natural Sciences, Philadelphia
 +
* Paula Mabee, University of South Dakota
 +
* Richard Mayden, St. Louis University
 +
* Martin Ringwald, The Jackson Laboratory
 +
* Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
 +
* Erik Segerdell, OHSU
 +
* Brian Sidlauskas, Oregon State University
 +
* Sandrine Tercerie, Muséum National d'Histoire Naturelle
 +
* Ceri Van Slyke, Zebrafish Information Network
 +
* Richard Vari, National Museum of Natural History, Smithsonian Institution
 +
* Matt Vickaryous, University of Guelph
 +
* Jacqueline Webb, University of Rhode Island
 +
* Edward Wiley, The University of Kansas
  
−
Brian Sidlauskas, National Evolutionary Synthesis Center
+
===Vertebrate and Teleost Taxonomy Ontology Contributors===
 +
* John Alroy, Paleobiology Database
 +
* Nicolas Bailly, WorldFish Center, Philippines
 +
* Stan Blum, California Academy of Sciences
 +
* Miles Coburn, John Carroll University
 +
* Kevin Conway, St. Louis University
 +
* Wasila Dahdul, University of South Dakota
 +
* T. Alexander Dececchi, University of South Dakota
 +
* Bill Eschmeyer, California Academy of Sciences
 +
* Rainer Froese, Leibniz-Institute of Marine Sciences
 +
* Terry Grande, Loyola University, Chicago
 +
* Eric Hilton, Virginia Institute of Marine Science
 +
* Nizar Ibrahim, University of Chicago
 +
* John Lundberg, The Academy of Natural Sciences, Philadelphia
 +
* Richard Mayden, St. Louis University
 +
* Paul Sereno, University of Chicago
  
−
Richard Vari, National Museum of Natural History, Smithsonian Institution
+
===Vertebrate Skeletal Anatomy Ontology (VSAO) Contributors===
 +
* James P. Balhoff, National Evolutionary Synthesis Center
 +
* David C. Blackburn, California Academy of Sciences
 +
* Wasila Dahdul, University of South Dakota
 +
* Alexander D. Diehl, University at Buffalo, The State University of New York
 +
* Melissa A. Haendel, Oregon Health & Science University
 +
* Brian K. Hall, Dalhousie University
 +
* Terry Hayamizu, The Jackson Laboratory
 +
* Nizar Ibrahim, University of Chicago
 +
* Hilmar Lapp, National Evolutionary Synthesis Center
 +
* John G. Lundberg, The Academy of Natural Sciences
 +
* Paula M. Mabee, University of South Dakota
 +
* Christopher J. Mungall, Lawrence Berkeley National Laboratory
 +
* Martin Ringwald, The Jackson Laboratory
 +
* Erik Segerdell, Oregon Health & Science University
 +
* Paul Sereno, University of Chicago
 +
* Ceri E. Van Slyke, Zebrafish Information Network
 +
* Matthew K. Vickaryous, University of Guelph
 +
* Monte Westerfield, Zebrafish Information Network and University of Oregon
 +
* Christina James Zorn, Xenbase
  
−
Jacqueline Webb, University of Rhode Island
+
===Curators (Data Annotation)===
 +
* Bruno Chanet, Muséum National d'Histoire Naturelle
 +
* Miles Coburn, John Carroll University
 +
* Sonia Crichigno, Centro Regional Universitario Bariloche, (Univ. Nac. del Comahue), Argentina
 +
* Wasila Dahdul, University of South Dakota
 +
* T. Alexander Dececchi, University of South Dakota
 +
* Pasan Chinthana Fernando, University of South Dakota
 +
* Jeff Engeman, University of South Dakota
 +
* Benjamin Frable, National Museum of Natural History, Smithsonian Institution
 +
* Terry Grande, Loyola University, Chicago
 +
* Eric Hilton, Virginia Institute of Marine Science
 +
* Nizar Ibrahim, University of Chicago
 +
* Laura Jackson, University of South Dakota
 +
* Tova Just, Bryn Mawr College
 +
* John Lundberg, The Academy of Natural Sciences, Philadelphia
 +
* Paula Mabee, University of South Dakota
 +
* Richard Mayden, St. Louis University
 +
* Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
 +
* Sandrine Tercerie, Muséum National d'Histoire Naturelle
  
−
Edward Wiley, The University of Kansas
+
===Phenoscape Workshop Participants & Contributors===
 +
* Arhat Abzhanov, Harvard University
 +
* Gloria Arratia, The University of Kansas
 +
* Michael Ashburner, University of Cambridge
 +
* Jim Balhoff, National Evolutionary Synthesis Center
 +
* Rüdiger Bieler, Field Museum, Chicago
 +
* David Blackburn, University of Kansas
 +
* Judith Blake, The Jackson Laboratory
 +
* Stan Blum, California Academy of Sciences
 +
* Miles Coburn, John Carroll University
 +
* Kevin Conway, St. Louis University
 +
* Quentin Cronk, The University of British Columbia
 +
* Wasila Dahdul, University of South Dakota
 +
* Mário de Pinna, Universidade de São Paulo
 +
* Andy Deans, North Carolina State University
 +
* Alexander Diehl, University at Buffalo, The State University of New York
 +
* Torsten Dikow, Field Museum, Chicago
 +
* Jeff Engeman, University of South Dakota
 +
* George Gkoutos, University of Cambridge
 +
* Lance Grande, Field Museum, Chicago
 +
* Terry Grande, Loyola University, Chicago
 +
* Melissa Haendel, Zebrafish Information Network
 +
* Brian Hall, Dalhousie University
 +
* Eric Hilton, Virginia Institute of Marine Science
 +
* Robert Ho, University of Chicago
 +
* Hopi Hoekstra, Harvard University
 +
* Hans Hofmann, University of Texas at Austin
 +
* Elizabeth Jockusch, Univesity of Connecticut
 +
* Elizabeth Kellogg, University of Missouri, St. Louis
 +
* Chuck Kimmel, University of Oregon
 +
* Cartik Kothari, National Evolutionary Synthesis Center
 +
* Hilmar Lapp, National Evolutionary Synthesis Center
 +
* Suzanna Lewis, Berkeley Bioinformatics and Ontology Project
 +
* John Lundberg, The Academy of Natural Sciences, Philadelphia
 +
* Paula Mabee, University of South Dakota
 +
* Anne Maglia, Missouri University of Science and Technology
 +
* Joanna Mandecki, University of Chicago
 +
* Austin Mast, Florida State University
 +
* Richard Mayden, St. Louis University
 +
* Charlene McCord, University of Chicago
 +
* Peter Midford, National Evolutionary Synthesis Center
 +
* Chris Mungall, Berkeley Bioinformatics and Ontology Project
 +
* Vicky Prince, University of Chicago
 +
* Martin Ramirez, Museo Argentino de Ciencias Naturales "Bernardino Rivadavia," Argentina
 +
* Sue Rhee, Carnegie Institution
 +
* Martin Ringwald, The Jackson Laboratory
 +
* Nelson Rios, Tulane University
 +
* Callum Ross, University of Chicago
 +
* Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
 +
* Erik Segerdell, University of Calgary
 +
* Paul Sereno, University of Chicago
 +
* Brian Sidlauskas, Oregon State University
 +
* Barry Smith, University at Buffalo
 +
* David Stern, Princeton University
 +
* Margaret Thayer, Field Museum, Chicago
 +
* Ceri Van Slyke, Zebrafish Information Network
 +
* Matt Vickaryous, University of Guelph
 +
* Todd Vision, National Evolutionary Synthesis Center and University of North Carolina at Chapel Hill
 +
* Peter Vize, University of Calgary
 +
* Gunter Wagner, Yale University
 +
* Michael Wallinga, University of South Dakota
 +
* Nicole Washington, Lawrence Berkeley National Lab
 +
* Monte Westerfield, Zebrafish Information Network and University of Oregon
 +
* Mark Westneat, Field Museum, Chicago
 +
* Edward Wiley, The University of Kansas
 +
* Matt Yoder, North Carolina State University
  
 +
===Software testing===
 +
* Angel Amores, University of Oregon
 +
* Carole Baldwin, Smithsonian National Museum of Natural History
 +
* Susan Bassham, University of Oregon
 +
* Judith Blake, The Jackson Laboratory
 +
* Miles Coburn, John Carroll University
 +
* William Cresko, University of Oregon
 +
* April DeLaurier, University of Oregon
 +
* Jeff Engeman, University of South Dakota
 +
* Vladimir Gapeyev, National Evolutionary Synthesis Center
 +
* Terry Grande, Loyola University, Chicago
 +
* Melissa Haendel, Zebrafish Information Network
 +
* Eric Hilton, Virginia Institute of Marine Science
 +
* Ryan Kerney, Dalhousie University
 +
* Suzanna Lewis, Berkeley Bioinformatics and Ontology Project
 +
* Daniel Lumbantobing, George Washington University
 +
* John Lundberg, The Academy of Natural Sciences, Philadelphia
 +
* Anne Maglia, Missouri University of Science and Technology
 +
* Richard Mayden, St. Louis University
 +
* Julie Mounts, Smithsonian National Museum of Natural History
 +
* Conor O'Brien, University of Oregon
 +
* Lynne Parenti, Smithsonian National Museum of Natural History
 +
* Rafael de Sá, University of Richmond
 +
* Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
 +
* Brian Sidlauskas, Oregon State University
 +
* Jiakun Song, Smithsonian National Museum of Natural History
 +
* Jared Talbot, University of Oregon
 +
* Sandrine Tercerie, Muséum National d'Histoire Naturelle
 +
* Tom Titus, University of Oregon
 +
* Linda Trueb, University of Kansas
 +
* Ceri Van Slyke, Zebrafish Information Network
 +
* David Wake, University of California, Berkeley
 +
* Marvalee Wake, University of California, Berkeley
 +
* Matt Yoder, North Carolina State University
  
−
=== Teleost Taxonomy Ontology Contributors ===
+
===Students===
 +
* Alex Ahearn, Duke University
 +
* Alyssa Block, University of South Dakota
 +
* Jordan Catlett, University of South Dakota
 +
* Sonia Crichigno, Centro Regional Universitario Bariloche, (Univ. Nac. del Comahue), Argentina
 +
* Jeff Engeman, University of South Dakota
 +
* Pasan Chinthana Fernando, University of South Dakota
 +
* Benjamin Frable, National Museum of Natural History, Smithsonian Institution
 +
* Char Green, University of South Dakota
 +
* Ericka Grey, University of South Dakota
 +
* Laura Jackson, University of South Dakota
 +
* Tova Just, Bryn Mawr College
 +
* Jun Hong Kim, Duke University
 +
* Jonathan Lee, Duke University
 +
* Leah Mabee, University of South Dakota
 +
* Callie Mao, Duke University
 +
* Mtakai Ngara, International Institute of Tropical Agriculture, Nairobi, Kenya
 +
* Carla Perez, Duke University
 +
* Carin Rambow, University of South Dakota
 +
* Du Rui, University of South Dakota
 +
* Brad Schanche, University of South Dakota
 +
* Michael Wallinga, University of South Dakota
 +
* Hong Xu, Duke University
 +
* Lucy Zhang, Duke University
  
−
Stan Blum, California Academy of Sciences
+
===Groups===
 +
* [http://http://www.deepfin.org/ DeepFin Research Coordination Network] - support for training and participation of ichthyology students and researchers
  
−
Miles Coburn, John Carroll University
+
==Data sources==
 +
* [https://monarchinitiative.org Monarch Initiative] - aggregated and semantically harmonized model organism and human genes and phenotypes
 +
* [http://zfin.org ZFIN] - mutant and morpholino zebrafish genes and phenotypes
 +
* [http://research.calacademy.org/ichthyology/catalog Catalog of Fishes] - fish taxonomy, list of collections
 +
* [http://www.fishbase.org/ Fishbase] - fish common names
 +
* [http://amphibiaweb.org/ Amphibiaweb] - amphibian taxonomy
 +
* [http://paleodb.org The Paleobiology Database] - taxonomy of extinct chordate taxa
 +
* [http://www.worldbirdnames.org/index.html IOC World Bird Names] - taxonomy of extant birds
 +
* [http://www.ncbi.nlm.nih.gov/Taxonomy/ NCBI taxonomy] - taxonomy for groups not otherwise covered
 +
* [http://www.catalogueoflife.org/ Catalogue of Life] - source of taxonomic synonyms
  
−
Kevin Conway, St. Louis University
+
==Funding==
 +
The [http://scate.phenoscape.org SCATE project] is funded by NSF collaborative grants DBI-1661456 (Duke University), DBI-1661529 (Virginia Tech), DBI-1661516 (University of South Dakota), and DBI-1661356 (UNC Chapel Hill and RENCI). The Phenoscape II project was funded by NSF collaborative grants DBI-1062404 and DBI-1062542 grant and the National Evolutionary Synthesis Center (NESCent), NSF #EF-0905606. Its predecessor, the [[Phenoscape I]] project, was funded by NSF grant BDI-0641025, and supported by NESCent, NSF #EF-0423641.
  
−
Wasila Dahdul, University of South Dakota
+
[[Category:Curation]]
−
 
+
[[Category:Community]]
−
Bill Eschmeyer, California Academy of Sciences
 
−
 
 
−
Terry Grande, Loyola University, Chicago
 
−
 
 
−
Eric Hilton, Virginia Institute of Marine Science
 
−
 
 
−
John Lundberg, The Academy of Natural Sciences, Philadelphia
 
−
 
 
−
Richard Mayden, St. Louis University
 
−
 
 
−
 
 
−
=== Curators (Data Annotation) ===
 
−
 
 
−
Miles Coburn, John Carroll University
 
−
 
 
−
Sonia Crichigno, Centro Regional Universitario Bariloche, (Univ. Nac. del Comahue), Argentina
 
−
 
 
−
Jeff Engemen, University of South Dakota
 
−
 
 
−
Terry Grande, Loyola University, Chicago
 
−
 
 
−
Eric Hilton, Virginia Institute of Marine Science
 
−
 
 
−
John Lundberg, The Academy of Natural Sciences, Philadelphia
 
−
 
 
−
Paula Mabee, University of South Dakota
 
−
 
 
−
Richard Mayden, St. Louis University
 
−
 
 
−
Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
 
−
 
 
−
 
 
−
=== Phenoscape Workshop Participants & Contributors ===
 
−
 
 
−
Arhat Abzhanov, Harvard University
 
−
 
 
−
Gloria Arratia, The University of Kansas
 
−
 
 
−
Michael Ashburner, University of Cambridge
 
−
 
 
−
Jim Balhoff, National Evolutionary Synthesis Center
 
−
 
 
−
Judith Blake, The Jackson Laboratory
 
−
 
 
−
Stan Blum, California Academy of Sciences
 
−
 
 
−
Miles Coburn, John Carroll University
 
−
 
 
−
Kevin Conway, St. Louis University
 
−
 
 
−
Quentin Cronk, The University of British Columbia
 
−
 
 
−
Wasila Dahdul, University of South Dakota
 
−
 
 
−
Mário de Pinna, Universidade de São Paulo
 
−
 
 
−
Andy Deans, North Carolina State University
 
−
 
 
−
Jeff Engemen, University of South Dakota
 
−
 
 
−
George Gkoutos, University of Cambridge
 
−
 
 
−
Terry Grande, Loyola University, Chicago
 
−
 
 
−
Melissa Haendel, Zebrafish Information Network
 
−
 
 
−
Eric Hilton, Virginia Institute of Marine Science
 
−
 
 
−
Hopi Hoekstra, Harvard University
 
−
 
 
−
Hans Hofmann, University of Texas at Austin
 
−
 
 
−
Elizabeth Jockusch, Univesity of Connecticut
 
−
 
 
−
Elizabeth Kellogg, University of Missouri, St. Louis
 
−
 
 
−
Chuck Kimmel, University of Oregon
 
−
 
 
−
Cartik Kothari, National Evolutionary Synthesis Center
 
−
 
 
−
Hilmar Lapp, National Evolutionary Synthesis Center
 
−
 
 
−
Suzanna Lewis, Berkeley Bioinformatics and Ontology Project
 
−
 
 
−
John Lundberg, The Academy of Natural Sciences, Philadelphia
 
−
 
 
−
Paula Mabee, University of South Dakota
 
−
 
 
−
Anne Maglia, Missouri University of Science and Technology
 
−
 
 
−
Austin Mast, Florida State University
 
−
 
 
−
Richard Mayden, St. Louis University
 
−
 
 
−
Peter Midford, University of Kansas
 
−
 
 
−
Chris Mungall, Berkeley Bioinformatics and Ontology Project
 
−
 
 
−
Martin Ramirez, Museo Argentino de Ciencias Naturales "Bernardino Rivadavia," Argentina
 
−
 
 
−
Sue Rhee, Carnegie Institution
 
−
 
 
−
Martin Ringwald, The Jackson Laboratory
 
−
 
 
−
Nelson Rios, Tulane University
 
−
 
 
−
Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
 
−
 
 
−
Eric Segerdell, University of Calgary
 
−
 
 
−
Brian Sidlauskas, National Evolutionary Synthesis Center
 
−
 
 
−
Barry Smith, University at Buffalo
 
−
 
 
−
David Stern, Princeton University
 
−
 
 
−
Todd Vision, National Evolutionary Synthesis Center and University of North Carolina at Chapel Hill
 
−
 
 
−
Peter Vize, University of Calgary
 
−
 
 
−
Gunter Wagner, Yale University
 
−
 
 
−
Michael Wallinga, University of South Dakota
 
−
 
 
−
Nicole Washington, Lawrence Berkeley National Lab
 
−
 
 
−
Monte Westerfield, Zebrafish Information Network and University of Oregon
 
−
 
 
−
Edward Wiley, The University of Kansas
 
−
 
 
−
 
 
−
=== Students ===
 
−
 
 
−
Alex Ahearn, Duke University
 
−
 
 
−
Alyssa Block, University of South Dakota
 
−
 
 
−
Sonia Crichigno, Centro Regional Universitario Bariloche, (Univ. Nac. del Comahue), Argentina
 
−
 
 
−
Jeff Engeman, University of South Dakota
 
−
 
 
−
Ericka Grey, University of South Dakota
 
−
 
 
−
Jonathan Lee, Duke University
 
−
 
 
−
Leah Mabee, University of South Dakota
 
−
 
 
−
Carla Perez, Duke University
 
−
 
 
−
Carin Rambow, University of South Dakota
 
−
 
 
−
Du Rui, University of South Dakota
 
−
 
 
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Brad Schanche, University of South Dakota
 
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Michael Wallinga, University of South Dakota
 

Latest revision as of 23:44, 16 December 2019

Project team

SCATE Project

University of North Carolina at Chapel Hill University of South Dakota
  • Todd Vision (Department of Biology)
  • Jim Balhoff (Renaissance Computing Institute)
  • Shalki Shrivastava (Renaissance Computing Institute)
Duke University Virginia Tech
  • Hilmar Lapp (Center for Genomic and Computational Biology)
  • Amandeep Rathee (M.Sc. Student)
  • Josef Uyeda (Department of Biological Sciences)
  • Diego Sasso Porto (postdoc)
  • Sergei Tarasov (now at Finnish Museum of Natural History)

Phenoscape II Project

National Evolutionary Synthesis Center (NESCent) University of South Dakota University of Oregon (Zebrafish Information Network)
  • Todd Vision (also University of North Carolina at Chapel Hill)
  • Hilmar Lapp (now at Duke University, Center for Genomic and Computational Biology)
  • Jim Balhoff (now at RTI Intl.)
  • Prashanti Manda (now at University of North Carolina at Greensboro)
  • Paula Mabee
  • Wasila Dahdul
  • Alex Dececchi
Oregon Health & Science University
  • Melissa Haendel
University of Chicago Mouse Genome Informatics Cincinnati Children's Hospital Medical Center
  • Paul Sereno
  • Nizar Ibrahim
  • Judith Blake
  • Terry Hayamizu
  • Aaron Zorn (Xenbase)
  • Christina James-Zorn (Xenbase)
California Academy of Sciences University of Arizona Lawrence Berkeley National Labs
  • David Blackburn
  • Hong Cui
  • Zilong Chang
  • Chris Mungall

Phenoscape I Project

  • Paula Mabee, University of South Dakota
  • Monte Westerfield, Zebrafish Information Network and University of Oregon
  • Todd Vision, National Evolutionary Synthesis Center and University of North Carolina at Chapel Hill
  • Hilmar Lapp, National Evolutionary Synthesis Center
  • Jim Balhoff, National Evolutionary Synthesis Center
  • Wasila Dahdul, University of South Dakota
  • Peter Midford, National Evolutionary Synthesis Center

Advisory Board

SCATE Project

Members

  • Scott Chamberlain (rOpenSci)
  • Emily Jane McTavish (University of California, Merced)
  • Brian Sidlauskas (Oregon State University)
  • Pam Soltis (University of Florida)
  • Paul Thomas (University of Southern California)

Meetings

  • Advisory Board meeting on January 7, 2020, after the SSB 2020 meeting at University of Florida


Phenoscape II

Members

  • John Day-Richter (Google)
  • Brian K. Hall (Dalhousie University)
  • Cyndy Parr (Encyclopedia of Life) (2012-)
  • Paul Schofield (University of Cambridge)
  • Peter Vize (University of Calgary)
  • Alan Ruttenberg (University of Buffalo)

Meetings

Contributors

The following groups and individuals have contributed to Phenoscape ontology development, data curation, workshops, and data entry:

Phenoscape Contributors to the Uberon Anatomy Ontology

  • Wasila Dahdul, University of South Dakota
  • David Blackburn, California Academy of Sciences
  • T. Alexander Dececchi, University of South Dakota
  • Pasan Chinthana Fernando, University of South Dakota
  • Melissa Haendel, Oregon Health Sciences University
  • Terry Hayamizu, Mouse Genome Informatics
  • Nizar Ibrahim, University of Chicago
  • Laura Jackson, University of South Dakota
  • Paula Mabee, University of South Dakota
  • Chris Mungall, Lawrence Berkeley Labs

Teleost Anatomy Ontology (TAO) Contributors

  • Gloria Arratia, The University of Kansas
  • David Blackburn, University of Kansas
  • Miles Coburn, John Carroll University
  • Kevin Conway, St. Louis University
  • Wasila Dahdul, University of South Dakota
  • Mário de Pinna, Universidade de São Paulo
  • Alexander Diehl, University at Buffalo, The State University of New York
  • Jeff Engeman, University of South Dakota
  • Benjamin Frable, National Museum of Natural History, Smithsonian Institution
  • Terry Grande, Loyola University, Chicago
  • Melissa Haendel, OHSU
  • Brian Hall, Dalhousie University
  • Eric Hilton, Virginia Institute of Marine Science
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Paula Mabee, University of South Dakota
  • Richard Mayden, St. Louis University
  • Martin Ringwald, The Jackson Laboratory
  • Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
  • Erik Segerdell, OHSU
  • Brian Sidlauskas, Oregon State University
  • Sandrine Tercerie, Muséum National d'Histoire Naturelle
  • Ceri Van Slyke, Zebrafish Information Network
  • Richard Vari, National Museum of Natural History, Smithsonian Institution
  • Matt Vickaryous, University of Guelph
  • Jacqueline Webb, University of Rhode Island
  • Edward Wiley, The University of Kansas

Vertebrate and Teleost Taxonomy Ontology Contributors

  • John Alroy, Paleobiology Database
  • Nicolas Bailly, WorldFish Center, Philippines
  • Stan Blum, California Academy of Sciences
  • Miles Coburn, John Carroll University
  • Kevin Conway, St. Louis University
  • Wasila Dahdul, University of South Dakota
  • T. Alexander Dececchi, University of South Dakota
  • Bill Eschmeyer, California Academy of Sciences
  • Rainer Froese, Leibniz-Institute of Marine Sciences
  • Terry Grande, Loyola University, Chicago
  • Eric Hilton, Virginia Institute of Marine Science
  • Nizar Ibrahim, University of Chicago
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Richard Mayden, St. Louis University
  • Paul Sereno, University of Chicago

Vertebrate Skeletal Anatomy Ontology (VSAO) Contributors

  • James P. Balhoff, National Evolutionary Synthesis Center
  • David C. Blackburn, California Academy of Sciences
  • Wasila Dahdul, University of South Dakota
  • Alexander D. Diehl, University at Buffalo, The State University of New York
  • Melissa A. Haendel, Oregon Health & Science University
  • Brian K. Hall, Dalhousie University
  • Terry Hayamizu, The Jackson Laboratory
  • Nizar Ibrahim, University of Chicago
  • Hilmar Lapp, National Evolutionary Synthesis Center
  • John G. Lundberg, The Academy of Natural Sciences
  • Paula M. Mabee, University of South Dakota
  • Christopher J. Mungall, Lawrence Berkeley National Laboratory
  • Martin Ringwald, The Jackson Laboratory
  • Erik Segerdell, Oregon Health & Science University
  • Paul Sereno, University of Chicago
  • Ceri E. Van Slyke, Zebrafish Information Network
  • Matthew K. Vickaryous, University of Guelph
  • Monte Westerfield, Zebrafish Information Network and University of Oregon
  • Christina James Zorn, Xenbase

Curators (Data Annotation)

  • Bruno Chanet, Muséum National d'Histoire Naturelle
  • Miles Coburn, John Carroll University
  • Sonia Crichigno, Centro Regional Universitario Bariloche, (Univ. Nac. del Comahue), Argentina
  • Wasila Dahdul, University of South Dakota
  • T. Alexander Dececchi, University of South Dakota
  • Pasan Chinthana Fernando, University of South Dakota
  • Jeff Engeman, University of South Dakota
  • Benjamin Frable, National Museum of Natural History, Smithsonian Institution
  • Terry Grande, Loyola University, Chicago
  • Eric Hilton, Virginia Institute of Marine Science
  • Nizar Ibrahim, University of Chicago
  • Laura Jackson, University of South Dakota
  • Tova Just, Bryn Mawr College
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Paula Mabee, University of South Dakota
  • Richard Mayden, St. Louis University
  • Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
  • Sandrine Tercerie, Muséum National d'Histoire Naturelle

Phenoscape Workshop Participants & Contributors

  • Arhat Abzhanov, Harvard University
  • Gloria Arratia, The University of Kansas
  • Michael Ashburner, University of Cambridge
  • Jim Balhoff, National Evolutionary Synthesis Center
  • Rüdiger Bieler, Field Museum, Chicago
  • David Blackburn, University of Kansas
  • Judith Blake, The Jackson Laboratory
  • Stan Blum, California Academy of Sciences
  • Miles Coburn, John Carroll University
  • Kevin Conway, St. Louis University
  • Quentin Cronk, The University of British Columbia
  • Wasila Dahdul, University of South Dakota
  • Mário de Pinna, Universidade de São Paulo
  • Andy Deans, North Carolina State University
  • Alexander Diehl, University at Buffalo, The State University of New York
  • Torsten Dikow, Field Museum, Chicago
  • Jeff Engeman, University of South Dakota
  • George Gkoutos, University of Cambridge
  • Lance Grande, Field Museum, Chicago
  • Terry Grande, Loyola University, Chicago
  • Melissa Haendel, Zebrafish Information Network
  • Brian Hall, Dalhousie University
  • Eric Hilton, Virginia Institute of Marine Science
  • Robert Ho, University of Chicago
  • Hopi Hoekstra, Harvard University
  • Hans Hofmann, University of Texas at Austin
  • Elizabeth Jockusch, Univesity of Connecticut
  • Elizabeth Kellogg, University of Missouri, St. Louis
  • Chuck Kimmel, University of Oregon
  • Cartik Kothari, National Evolutionary Synthesis Center
  • Hilmar Lapp, National Evolutionary Synthesis Center
  • Suzanna Lewis, Berkeley Bioinformatics and Ontology Project
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Paula Mabee, University of South Dakota
  • Anne Maglia, Missouri University of Science and Technology
  • Joanna Mandecki, University of Chicago
  • Austin Mast, Florida State University
  • Richard Mayden, St. Louis University
  • Charlene McCord, University of Chicago
  • Peter Midford, National Evolutionary Synthesis Center
  • Chris Mungall, Berkeley Bioinformatics and Ontology Project
  • Vicky Prince, University of Chicago
  • Martin Ramirez, Museo Argentino de Ciencias Naturales "Bernardino Rivadavia," Argentina
  • Sue Rhee, Carnegie Institution
  • Martin Ringwald, The Jackson Laboratory
  • Nelson Rios, Tulane University
  • Callum Ross, University of Chicago
  • Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
  • Erik Segerdell, University of Calgary
  • Paul Sereno, University of Chicago
  • Brian Sidlauskas, Oregon State University
  • Barry Smith, University at Buffalo
  • David Stern, Princeton University
  • Margaret Thayer, Field Museum, Chicago
  • Ceri Van Slyke, Zebrafish Information Network
  • Matt Vickaryous, University of Guelph
  • Todd Vision, National Evolutionary Synthesis Center and University of North Carolina at Chapel Hill
  • Peter Vize, University of Calgary
  • Gunter Wagner, Yale University
  • Michael Wallinga, University of South Dakota
  • Nicole Washington, Lawrence Berkeley National Lab
  • Monte Westerfield, Zebrafish Information Network and University of Oregon
  • Mark Westneat, Field Museum, Chicago
  • Edward Wiley, The University of Kansas
  • Matt Yoder, North Carolina State University

Software testing

  • Angel Amores, University of Oregon
  • Carole Baldwin, Smithsonian National Museum of Natural History
  • Susan Bassham, University of Oregon
  • Judith Blake, The Jackson Laboratory
  • Miles Coburn, John Carroll University
  • William Cresko, University of Oregon
  • April DeLaurier, University of Oregon
  • Jeff Engeman, University of South Dakota
  • Vladimir Gapeyev, National Evolutionary Synthesis Center
  • Terry Grande, Loyola University, Chicago
  • Melissa Haendel, Zebrafish Information Network
  • Eric Hilton, Virginia Institute of Marine Science
  • Ryan Kerney, Dalhousie University
  • Suzanna Lewis, Berkeley Bioinformatics and Ontology Project
  • Daniel Lumbantobing, George Washington University
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Anne Maglia, Missouri University of Science and Technology
  • Richard Mayden, St. Louis University
  • Julie Mounts, Smithsonian National Museum of Natural History
  • Conor O'Brien, University of Oregon
  • Lynne Parenti, Smithsonian National Museum of Natural History
  • Rafael de Sá, University of Richmond
  • Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
  • Brian Sidlauskas, Oregon State University
  • Jiakun Song, Smithsonian National Museum of Natural History
  • Jared Talbot, University of Oregon
  • Sandrine Tercerie, Muséum National d'Histoire Naturelle
  • Tom Titus, University of Oregon
  • Linda Trueb, University of Kansas
  • Ceri Van Slyke, Zebrafish Information Network
  • David Wake, University of California, Berkeley
  • Marvalee Wake, University of California, Berkeley
  • Matt Yoder, North Carolina State University

Students

  • Alex Ahearn, Duke University
  • Alyssa Block, University of South Dakota
  • Jordan Catlett, University of South Dakota
  • Sonia Crichigno, Centro Regional Universitario Bariloche, (Univ. Nac. del Comahue), Argentina
  • Jeff Engeman, University of South Dakota
  • Pasan Chinthana Fernando, University of South Dakota
  • Benjamin Frable, National Museum of Natural History, Smithsonian Institution
  • Char Green, University of South Dakota
  • Ericka Grey, University of South Dakota
  • Laura Jackson, University of South Dakota
  • Tova Just, Bryn Mawr College
  • Jun Hong Kim, Duke University
  • Jonathan Lee, Duke University
  • Leah Mabee, University of South Dakota
  • Callie Mao, Duke University
  • Mtakai Ngara, International Institute of Tropical Agriculture, Nairobi, Kenya
  • Carla Perez, Duke University
  • Carin Rambow, University of South Dakota
  • Du Rui, University of South Dakota
  • Brad Schanche, University of South Dakota
  • Michael Wallinga, University of South Dakota
  • Hong Xu, Duke University
  • Lucy Zhang, Duke University

Groups

Data sources

Funding

The SCATE project is funded by NSF collaborative grants DBI-1661456 (Duke University), DBI-1661529 (Virginia Tech), DBI-1661516 (University of South Dakota), and DBI-1661356 (UNC Chapel Hill and RENCI). The Phenoscape II project was funded by NSF collaborative grants DBI-1062404 and DBI-1062542 grant and the National Evolutionary Synthesis Center (NESCent), NSF #EF-0905606. Its predecessor, the Phenoscape I project, was funded by NSF grant BDI-0641025, and supported by NESCent, NSF #EF-0423641.

Retrieved from "https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Acknowledgments&oldid=12140"