Difference between revisions of "Links"
From phenoscape
(→Software) |
(→Links relevant to the project) |
||
| Line 13: | Line 13: | ||
===Fish resources=== | ===Fish resources=== | ||
| − | * [http://www.zfin.org Zebrafish Information Network] (ZFIN) | + | * [http://www.zfin.org Zebrafish Information Network] (ZFIN) |
| − | * [http://www.deepfin.org/ DeepFin] | + | * [http://www.deepfin.org/ DeepFin] |
| − | * [http://www.digitalfishlibrary.org/ Digital Fish Library] | + | * [http://silurus.acnatsci.org/ All Catfish Species] |
| − | * [http://www.calacademy.org/RESEARCH/ichthyology/catalog/fishcatsearch.html Catalog of Fishes] | + | * [http://www.digitalfishlibrary.org/ Digital Fish Library] |
| − | * [http://fishbase.org/ FishBase] | + | * [http://www.calacademy.org/RESEARCH/ichthyology/catalog/fishcatsearch.html Catalog of Fishes] |
| + | * [http://fishbase.org/ FishBase] | ||
===Morphology image database resources=== | ===Morphology image database resources=== | ||
* [http://www.morphbank.net/ Morphbank] | * [http://www.morphbank.net/ Morphbank] | ||
| − | * [http://morphobank.geongrid.org/ MorphoBank] | + | * [http://morphobank.geongrid.org/ MorphoBank] |
| − | * [http://digimorph.org/ Digimorph] | + | * [http://digimorph.org/ Digimorph] |
* [http://aug.csres.utexas.edu/PhylogenyWiki/ Morphster] | * [http://aug.csres.utexas.edu/PhylogenyWiki/ Morphster] | ||
| Line 34: | Line 35: | ||
Support (for issues) and feature requests for the NCBO BioPortal can be submitted through the following venues (according to Benjamin Dai, BioPortal Lead Software Architect): | Support (for issues) and feature requests for the NCBO BioPortal can be submitted through the following venues (according to Benjamin Dai, BioPortal Lead Software Architect): | ||
| − | * [https://bmir-gforge.stanford.edu/gf/project/bioportal/tracker/?action=TrackerItemBrowse&tracker_id=63 BioPortal issue tracker] at the BMIR GForge installation | + | * [https://bmir-gforge.stanford.edu/gf/project/bioportal/tracker/?action=TrackerItemBrowse&tracker_id=63 BioPortal issue tracker] at the BMIR GForge installation |
* Support email: [mailto:support%40bioontology%2eorg support@bioontology.org] | * Support email: [mailto:support%40bioontology%2eorg support@bioontology.org] | ||
'''NCBO BioPortal User Group:''' | '''NCBO BioPortal User Group:''' | ||
| − | We are a (voting) member of the BioPortal User Group. The group has monthly teleconferences where new features are being discusses and subsequently prioritized through survey-voting. | + | We are a (voting) member of the BioPortal User Group. The group has monthly teleconferences where new features are being discusses and subsequently prioritized through survey-voting. |
* A Basecamp-based [https://ncboprojects.updatelog.com/projects/1487611/project/log BioPortal project management site] (login required) has User Group meeting presentations and other information. | * A Basecamp-based [https://ncboprojects.updatelog.com/projects/1487611/project/log BioPortal project management site] (login required) has User Group meeting presentations and other information. | ||
Revision as of 20:34, 10 July 2008
Contents
Links relevant to the project
Ontologies
National Center for Biomedical Ontology
- Ontologies from NCBO
- Ontology of Zebrafish Anatomy and Development
- Common Anatomy Reference Ontology (CARO) (also available in OWL format)
- Maintaining inter-ontology relations between species specific anatomy ontologies and CL/GO/CARO
- OBD Phenotype file formats - Includes standards and schemas for PhenoSyntax and PhenoXML
- Open Biomedical Data (OBD) data model, API, and other downloads
Fish resources
- Zebrafish Information Network (ZFIN)
- DeepFin
- All Catfish Species
- Digital Fish Library
- Catalog of Fishes
- FishBase
Morphology image database resources
Software
NCBO BioPortal support requests
Support (for issues) and feature requests for the NCBO BioPortal can be submitted through the following venues (according to Benjamin Dai, BioPortal Lead Software Architect):
- BioPortal issue tracker at the BMIR GForge installation
- Support email: support@bioontology.org
NCBO BioPortal User Group:
We are a (voting) member of the BioPortal User Group. The group has monthly teleconferences where new features are being discusses and subsequently prioritized through survey-voting.
- A Basecamp-based BioPortal project management site (login required) has User Group meeting presentations and other information.
Bibliography
We also maintain a list of references on Connotea, using the tag "phenoscape". This list may be more up-to-date than the bibliography below. Anyone can easily recommend references (and in fact any site or resource) to us simply by tagging it with "phenoscape" in Connotea.
Please see also our publications page for manuscripts and posters arising from the project.
References
<biblio>
- rosen1974 Rosen DE. 1974. Phylogeny and zoogeography of salmoniform fishes and relationships of Lepidogalaxias salamandroides. Bulletin of the American Museum of Natural History 153:267-325.
- finkfink1981 Fink SV, Fink WL. 1981. Interrelationships of the ostariophysan fishes (Teleostei). Zoological Journal of the Linnean Society 72(4):297-353.
- finkfink1997 Fink, S.V. and W.L. Fink. 1997. Interrelationships of the Ostariophysi. In: Interrelationships of Fishes, M. Stiassney, L. Parenti and D. Johnson (Eds). Academic Press, 209-249.
- schulz2007 pmid=17448242
</biblio>
