Difference between revisions of "Data Jamboree 2"
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**Fink, S. V.; Fink, W. L. (1996) (review first pass by Wasila Dahdul) | **Fink, S. V.; Fink, W. L. (1996) (review first pass by Wasila Dahdul) | ||
| − | *Mark Sabaj | + | *Mark Sabaj Pérez (Siluriformes) |
| − | **De Pinna ( | + | **De Pinna, M. C. C. 1993. Higher-level Phylogeny of Siluriformes (Teleostei: Ostariophysi), with a New Classification of the Order. City University of New York, New York. |
| − | **Mo ( | + | **Mo, T. 1991. Anatomy, Relationships and Systematics of the Bagridae (Teleostei: Siluroidei) with a Hypothesis of Siluroid Phylogeny, Theses Zoologicae, 17, Koeltz, Koenigstein. |
| − | **De Pinna ( | + | **De Pinna, M. C. C. 1996. A phylogenetic analysis of the Asian catfish families Sisoridae, Akysidae, and Amblycipitidae, with a hypothesis on the relationships of the neotropical Aspredinidae (Teleostei, Ostariophysi). Fieldiana: Zoology (New Series) 84:i–iv + 1-83. |
==Background Reading== | ==Background Reading== | ||
Revision as of 02:39, 17 September 2008
Second Morphology Data Jamboree
A workshop hosted by the National Evolutionary Synthesis Center (NESCent).
Contents
Location and Date
Venue: South Dakota Radisson Hotel, Rapid City (Sept. 27-29) Sylvan Lake Lodge, South Dakota (Sept. 29-Oct.1)
Date: September 27-October 1, 2008
Organizers: Paula Mabee, Monte Westerfield, Todd Vision, and Hilmar Lapp
Introduction
Purpose:
- Evaluation of prototypes for web user interface
- Character data entry by experts; introduce new curators to Phenote and data entry; test/enhance curation consistency; further refine curation interface
- Project personnel meeting
Agenda
Draft at Data_Jamboree_2/Agenda for the program for each day.
Resources
For curators:
- Guide to Character Annotation
- Entering a taxon list
- Group exercise instructions
- Phenote User Guide (this also contains detailed instructions for downloading and running Phenote)
- Resources for curators
Logistics
- Radisson Hotel, Rapid City (Sept. 27-29)
- Sylvan Lake Lodge (Sept. 29-Oct.1)
- Buffalo Roundup (Sep 29)
- Travel agent: Marybeth Vlasman or Kristen Walker at AAA travel
Participants
Members of the project team are in bold font.
| Name | Institution |
|---|---|
| Jim Balhoff | NESCent |
| Judith Blake | The Jackson Laboratory |
| Terry Grande | Loyola University, Chicago |
| Wasila Dahdul | University of South Dakota and NESCent |
| Jeff Engeman | University of South Dakota |
| Eric Hilton | Virginia Institute of Marine Science |
| Cartik Kothari | NESCent |
| Hilmar Lapp | NESCent |
| Suzanna Lewis | Berkeley Bioinformatics and Ontology Project |
| John Lundberg | Department of Ichthyology, Academy of Natural Sciences |
| Paula Mabee | University of South Dakota |
| Rick Mayden | St. Louis University |
| Peter Midford | Dept. of Ecology and Evolutionary Biology, University of Kansas |
| Mark Sabaj Pérez | Academy of Natural Sciences, Philadelphia |
| Todd Vision | NESCent, and Department of Biology, University of North Carolina at Chapel Hill |
| Monte Westerfield | Zebrafish Information Network (ZFIN) and Institute of Neuroscience, University of Oregon |
Papers for Annotation
for more information on the papers below see: http://spreadsheets.google.com/ccc?key=pTeXfTnVPxC-P1URVHbI4Qg&hl=en
- Terry Grande (Gonorynchiformes and Ostariophysi)
- de Pinna, M. C. C.; Grande, T. (1993)
- Grande, T. ; Poyato-Ariza, F J (1999)
- Poyato-Ariza, F. J. (1996)
- Richard Mayden (Cypriniformes)
- Mayden (1989)
- Cavender & Coburn (1992)
- Conway & Mayden (2007)
- Eric Hilton (Clupeiformes and Ostariophysi)
- Chang, M-M; Maisey, J G (2003)
- Arratia, G (1999)
- Fink, S. V.; Fink, W. L. (1996) (review first pass by Wasila Dahdul)
- Mark Sabaj Pérez (Siluriformes)
- De Pinna, M. C. C. 1993. Higher-level Phylogeny of Siluriformes (Teleostei: Ostariophysi), with a New Classification of the Order. City University of New York, New York.
- Mo, T. 1991. Anatomy, Relationships and Systematics of the Bagridae (Teleostei: Siluroidei) with a Hypothesis of Siluroid Phylogeny, Theses Zoologicae, 17, Koeltz, Koenigstein.
- De Pinna, M. C. C. 1996. A phylogenetic analysis of the Asian catfish families Sisoridae, Akysidae, and Amblycipitidae, with a hypothesis on the relationships of the neotropical Aspredinidae (Teleostei, Ostariophysi). Fieldiana: Zoology (New Series) 84:i–iv + 1-83.
Background Reading
- We use the tag "phenoscape" on Connotea. Everyone is welcome to suggest references by using this tag.
- Relevant manuscripts by members of the project team:
- Mabee PM, Ashburner M, Cronk Q, Gkoutos GV, Haendel M, Segerdell E, Mungall C, and Westerfield M. Phenotype ontologies: the bridge between genomics and evolution. Trends Ecol Evol 2007 Jul; 22(7) 345-50. doi:10.1016/j.tree.2007.03.013
- Mabee PM, Arratia G, Coburn M, Haendel M, Hilton EJ, Lundberg JG, Mayden RL, Rios N, and Westerfield M. Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish. J Exp Zoolog B Mol Dev Evol 2007 Jun 28. doi:10.1002/jez.b.21181
- Haendel, M.A., Neuhaus, F., Osumi-Sutherland, D.S., Mabee, P.M., Mejino J.L.V., Mungall, C.J., and Smith, B. (2008) CARO - The Common Anatomy Reference Ontology. In: Albert Burger, Duncan Davidson and Richard Baldock (Editors): Anatomy Ontologies for Bioinformatics: Principles and Practice. ISBN 978-1-84628-884-5.
