Difference between revisions of "Roadmap for first iteration"
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===Cartik=== | ===Cartik=== | ||
* Complete Term Info service | * Complete Term Info service | ||
+ | * Complete ZFIN loader. | ||
* Deploy OBD-WS application; continue deploying in-progress builds. | * Deploy OBD-WS application; continue deploying in-progress builds. | ||
+ | ** Package as WAR, deploy on Eryops. | ||
** Include real or dummy info and autocomplete services. | ** Include real or dummy info and autocomplete services. | ||
* Enhance OBD data loader pipeline to perform pre-processing of ZFA ontology, replacing xrefs with is_a links to TAO | * Enhance OBD data loader pipeline to perform pre-processing of ZFA ontology, replacing xrefs with is_a links to TAO |
Revision as of 21:30, 11 November 2008
This is a development roadmap for the first production iteration of the Phenoscape database and web interface, for introduction at the SICB 2009 meeting.
Contents
Nov. 10-14
Jim
- Document interface design requirements on wiki
- Investigate and begin documenting additional data service needs required by interface
- Start Rails web interface project; commit to SVN.
- Write EQ count script, as per Paula's request, using Ruby; provide results to Phenoscape mailing list.
Cartik
- Set up Eclipse project for Restlet based web service application on personal machine, commit to OBD-WS SVN.
- Begin implementing Term Info service
- Write code to parse ZFIN phenotype data and load into OBD
- See http://zfin.org/zf_info/downloads.html#phenotype
- Data: http://zfin.org/data_transfer/Downloads/pheno_obo.txt
- should use "exhibits" relation
Nov. 17-21
Jim
- Document data retrieval web service specifications
- Anatomy
- Taxon
- Genes
- Implement Rails app skeleton and code front page
- Implement reusable JavaScript term info panel and embed in front page search interface.
- Address NEXUS/Phenote file merging issues with Paula. Provide problematic files as NeXML to Paula and Wasila.
Cartik
- Complete Term Info service
- Complete ZFIN loader.
- Deploy OBD-WS application; continue deploying in-progress builds.
- Package as WAR, deploy on Eryops.
- Include real or dummy info and autocomplete services.
- Enhance OBD data loader pipeline to perform pre-processing of ZFA ontology, replacing xrefs with is_a links to TAO
- These xrefs seem to still be in TAO - may have to fix that or work around
- Implement autocomplete service
Nov. 24-28
Jim
- mostly on vacation
Cartik
- Provide dummy Anatomy data service(s).
- Implement data service(s) related to Anatomy (requirements documented Nov. 17-21).
Dec. 1-5
Jim
- Implement anatomy UI.
- Begin using autocomplete and term info services in all so-far developed user interfaces.
Cartik
- Provide all defined services as dummy services if not yet implemented.
- Complete implementing Anatomy data services.
- Begin implementing Taxon data services.
Dec. 8-12
Jim
- Complete anatomy user interface.
- Begin implementing taxon user interface.
Cartik
Dec. 15-19
Jim
- Complete taxon user interface.
- Implement and complete gene user interface.
Cartik
Outcome
Query UI
- Anatomy
- Taxon
- Gene
Data Content
- Ontologies
- Anatomy ontologies linkage
- Phenoscape annotations (NeXML)
- ZFIN annotations (tab-delimited)