Knowledgebase Reports

Reports on production Phenoscape KB

This contains consistency-checked and author-checked files (from 'phenex-files'). It is updated irregularly (every 1-3 months). This contains all of the data files found here.

• Date on which these data were loaded
• Count of annotated publications, by higher level taxon
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of all published characters
• Count of all annotated characters
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of all published character states
• Count of all annotated character states
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of publication taxa (OTUs) across all publications
• Count of annotated taxa (valid taxa, i.e. terms in TTO)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of EQ statements curated (state to phenotype links)
• Count of distinct phenotypes used in taxon annotations
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of curated phenotype assertions (taxon-phenotype annotations)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of distinct phenotype assertions (taxon-phenotype annotations)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of annotated genes
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of genotype-phenotype assertions (including morpholinos as genotypes)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of distinct gene-phenotype assertions (implied by genotype assertions)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of distinct phenotypes used in gene annotations
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only

Reports on kb-staging

This contains files that are going into production database (from 'phenex-files'); some are updated daily by curators. It currently contains Sandrine's files.

• Date on which these data were loaded
• Count of annotated publications, by higher level taxon
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of all published characters
• Count of all annotated characters
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of all published character states
• Count of all annotated character states
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of publication taxa (OTUs) across all publications
• Count of annotated taxa (valid taxa, i.e. terms in TTO)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of EQ statements curated (state to phenotype links)
• Count of distinct phenotypes used in taxon annotations
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of curated phenotype assertions (taxon-phenotype annotations)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of distinct phenotype assertions (taxon-phenotype annotations)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of annotated genes
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of genotype-phenotype assertions (including morpholinos as genotypes)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of distinct gene-phenotype assertions (implied by genotype assertions)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of distinct phenotypes used in gene annotations
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only

Reports on kb-dev

This database is used for active development and may often be broken. It should not be relied upon for everyday use.

Currently, this database is equivalent to staging but also includes Sandrine's data files.

• Date on which these data were loaded
• Count of annotated publications, by higher level taxon
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of all published characters
• Count of all annotated characters
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of all published character states
• Count of all annotated character states
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of publication taxa (OTUs) across all publications
• Count of annotated taxa (valid taxa, i.e. terms in TTO)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of EQ statements curated (state to phenotype links)
• Count of distinct phenotypes used in taxon annotations
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of curated phenotype assertions (taxon-phenotype annotations)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of distinct phenotype assertions (taxon-phenotype annotations)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of annotated genes
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of genotype-phenotype assertions (including morpholinos as genotypes)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of distinct gene-phenotype assertions (implied by genotype assertions)
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only
• Count of distinct phenotypes used in gene annotations
  • pelvic fin and parts only
  • pectoral fin and parts only
  • skeletal system and parts only

kb-old

This database has the old interface.