Difference between revisions of "Project Plan"
From phenoscape
Paula Mabee (talk | contribs) (→Target milestone: First quarter: October 1, 2011) |
Paula Mabee (talk | contribs) (→Project components) |
||
| Line 5: | Line 5: | ||
==1. Scalable workflow== | ==1. Scalable workflow== | ||
Primary personnel: Hong Cui, Jim, Todd, UNC postdoc, MS student | Primary personnel: Hong Cui, Jim, Todd, UNC postdoc, MS student | ||
| − | Overall objective: | + | Overall objective: |
=== Target milestone: First quarter: October 1, 2011 === | === Target milestone: First quarter: October 1, 2011 === | ||
| Line 26: | Line 26: | ||
=== Target milestone: Fourth quarter:July 1, 2012 === | === Target milestone: Fourth quarter:July 1, 2012 === | ||
| − | |||
| − | |||
| − | |||
==2. Anatomy ontology coordination== | ==2. Anatomy ontology coordination== | ||
| − | |||
| − | |||
| − | |||
| − | |||
==3. Homology reasoning== | ==3. Homology reasoning== | ||
Revision as of 15:49, 11 August 2011
Contents
Project components
Much of the schedule is based on the 2007 NSF grant, with amendments by the Dryad Consortium Management Board and subsequent grant commitments. For Dryad project developers and associates, a (private) detailed development plan is available. For completed releases, see the Release Notes. The original project plan is still available.
1. Scalable workflow
Primary personnel: Hong Cui, Jim, Todd, UNC postdoc, MS student Overall objective:
Target milestone: First quarter: October 1, 2011
Objective: Develop NLP to generate potential ontology terms and candidate EQ's in Phenex
- Generate list of terms to be added to ontologies (Hong)
- Evaluate accuracy of automated EQs on 50 character test set, refine testing set and methodology, begin development of Phenex ‘EQ suggestion’ interface requirements/specifications
- Identify corpus of publications, extract character descriptions
- Generate entities and qualities that can be identified, with frequency and ontology match
Action items:
- Wasila to send Hong the PDFs containing characters from the 50 char list - done
- Action item: Wasila to send Paul a curated pub
- Action Item: Jim will send Hong full database report with character text and EQ assignments
- Jim: to enumerate pros and cons for MX (web-based) and Phenex for first phone call, estimate development time
- Hong: Hire MS student at AZ
- Todd: Hire UNC postdoc
