WebHints

This page is an easily editable source for help popups in the Phenoscape web UI. Each entry below should be contained in a block element (DIV) with a mnemonic ID.

About Phenotypes

Helpful information about phenotypes (E, Q, RE).

Find a Specific Term

Use this tool to search using any valid term (taxon, gene, etc.) in the Knowledgebase. You must choose a matched value from the drop-down list before you can search.

Browse All Phenotypes

View all phenotypes used within annotations. Narrow results along dimensions of taxa, anatomical entities, phenotypic qualities, or gene classification.

Browse Taxa

Browse the taxonomic hierarchy and view detailed information about each term.

Browse Anatomical Entities

Browse the anatomy ontology hierarchy and view detailed information about each term.

Browse Phenotypic Qualities

Browse the phenotypic quality ontology hierarchy and view detailed information about each term.

Browse Genes

TODO

Browse Comparative Publications

TODO

Query Phenotype Annotations To Taxa

Use this to find the phenotypes associated with particular taxa; filter by publication.

Query Phenotype Annotations To Genes

Use this to find the phenotypes associated with particular genes.

Query Taxa

Use this to find a list of taxa associated with a particular phenotype or publication.

Query Genes

Use this to find a list of genes associated with a particular phenotype.

Query Comparative Publications

Find the publications that contain describe particular taxa or phenotypes.

Query Phenotypes

Use this to find a list of phenotypes associated with particular taxon, gene, or publication.

Visualize Phenotypic Profile Tree

TODO

Visualize Phenotypic Variation Tree

TODO

Apply higher taxon annotations to all included species

Phenotypes annotated to higher taxa (such as a whole fish family) are assumed to apply to all organisms within that group. For example, searching for 'basihyal bone absent' would return all species of catfish since this phenotype has been annotated for Siluriformes, the catfish order.

Add to workspace

When viewing query results, check the box to the left of any result to add it to the workspace. On the workspace page, you can combine saved items into new queries.

Add more entries here...