WebHints

This page is an easily editable source for help popups in the Phenoscape web UI. Each entry below should be contained in a block element (DIV) with a mnemonic ID.

About Phenotypes

See additional information about phenotypes (Entities, Qualities, and optionally Relational Entities).

Find a Specific Term

Search using any valid term (taxon, gene, etc.) in the Knowledgebase. You must choose a matched value from the drop-down list before you can search.

Browse All Phenotypes

View all phenotypes used within annotations. Narrow results by taxa, anatomical entity, phenotypic quality, or gene classification.

Browse Taxa

Browse the taxonomic hierarchy and view detailed information about each term.

Browse Anatomical Entities

Browse the anatomy ontology hierarchy and view detailed information about each term.

Browse Phenotypic Qualities

Browse the phenotypic quality ontology hierarchy and view detailed information about each term.

Browse Genes

TODO

Browse Comparative Publications

TODO

Query Phenotype Annotations To Taxa

Find phenotypes associated with particular taxa; filter by publication.

Query Phenotype Annotations To Genes

Find phenotypes associated with particular genes.

Query Taxa

Find the taxa associated with a particular phenotype or publication.

Query Genes

Find a list of genes associated with a particular phenotype.

Query Comparative Publications

Find publications that contain descriptions of particular taxa or phenotypes.

Query Phenotypes

Find a list of phenotypes associated with a particular taxon, gene, or publication.

Visualize Phenotypic Profile Tree

Visualize the extent to which a specified set of phenotypes is exhibited within and between taxa.

Visualize Phenotypic Variation Tree

Visualize the taxonomic distribution of a specified phenotype.

Apply higher taxon annotations to all included species

Phenotypes annotated to a higher taxon (e.g. all Euteleosts) are assumed to apply to all organisms within that group. For example, searching for 'basihyal bone absent' would return a list of all catfish (Siluriformes) species because this phenotype has been annotated at the level of the Siluriformes.

Add to workspace

When viewing query results, check the box to the left of any result to add it to the workspace. On the workspace page, you can combine saved items into new queries.

Add more entries here...