Difference between revisions of "Phenoscape KB"
From phenoscape
Jim Balhoff (talk | contribs) (→Data sources) |
Jim Balhoff (talk | contribs) (→ZFIN) |
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* [https://github.com/phenoscape/phenoscape-data/tree/master/Curation%20Files Evolutionary data matrices annotated by Phenoscape curators] | * [https://github.com/phenoscape/phenoscape-data/tree/master/Curation%20Files Evolutionary data matrices annotated by Phenoscape curators] | ||
===ZFIN=== | ===ZFIN=== | ||
| + | * Gene identifiers and names | ||
| + | ** http://zfin.org/downloads/genetic_markers.txt | ||
| + | ** http://zfin.org/downloads/aliases.txt | ||
| + | * Gene expression annotations | ||
| + | ** http://zfin.org/downloads/wildtype-expression.txt | ||
| + | * Genetic phenotype annotations | ||
| + | ** http://zfin.org/downloads/phenoGeneClean.txt | ||
| + | |||
===MGI=== | ===MGI=== | ||
===Xenbase=== | ===Xenbase=== | ||
Revision as of 19:28, 3 May 2013
The Phenoscape Knowledgebase (KB) is an integrated dataset, and software infrastructure and services, bringing together evolutionary data matrices annotated by Phenoscape curators, model organism phenotype and gene expression annotations, and a collection of ontologies providing a common semantic framework. The entire dataset is expressed in the OWL Web Ontology Language, and, when used as a database, stored in an RDF triplestore.
This page describes the in-development version of the KB built on OWL and RDF technologies, not the legacy Phenoscape Knowledgebase built on OBD.
Data sources
Phenoscape
ZFIN
- Gene identifiers and names
- Gene expression annotations
- Genetic phenotype annotations
