Difference between revisions of "Links"

Revision as of 13:46, 24 May 2007

Data typed using phenotype ontology

We also maintain a list of references on Connotea, using the tag "phenomap". This list may be more up-to-date than the bibliography below.

Anyone can easily recommend references (and in fact any site or resource) to us simply by tagging it with "phenomap" in Connotea.

Haendel, M.A., Neuhaus, F., Osumi-Sutherland, D.S., Mabee, P.M., Mejino J.L.V., Mungall, C.J., and Smith, B. (2008) CARO - The Common Anatomy Reference Ontology. In: Albert Burger, Duncan Davidson and Richard Baldock (Editors): Anatomy Ontologies for Bioinformatics: Principles and Practice. ISBN 978-1-84628-884-5.
Mabee PM et al (2007). Phenotype ontologies: the bridge between genomics and evolution. Trends Ecol Evol mabee2007
Schulz et al (2007). Spatial location and its relevance for terminological inferences in bio-ontologies. BMC Bioinformatics 2007, 8:134 doi:10.1186/1471-2105-8-134

</biblio>

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 '''[http://www.bioontology.org National Center for Biomedical Ontology]'''
 * [http://www.bioontology.org/ncbo/faces/pages/ontology_list.xhtml Ontologies from NCBO]
+* [http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/gross_anatomy/animal_gross_anatomy/fish/zebrafish_anatomy.obo Ontology of Zebrafish Anatomy and Development]
 * [http://obofoundry.org/cgi-bin/detail.cgi?caro Common Anatomy Reference Ontology (CARO)] ([http://purl.org/obo/owl/CARO also available in OWL format])
+* [http://www.bioontology.org/wiki/index.php/CL:Aligning_species-specific_anatomy_ontologies_with_CL Maintaining inter-ontology relations between species specific anatomy ontologies and CL/GO/CARO]
 * [http://www.fruitfly.org/~cjm/obd/formats.html OBD Phenotype file formats] - Includes standards and schemas for PhenoSyntax and PhenoXML