Difference between revisions of "Needs Analysis Workshop"
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* We have started to use the tag "<span class="plainlinks">[http://www.connotea.org/tag/phenomap phenomap]</span>" on Connotea. Everyone is welcome to suggest references by using this tag. | * We have started to use the tag "<span class="plainlinks">[http://www.connotea.org/tag/phenomap phenomap]</span>" on Connotea. Everyone is welcome to suggest references by using this tag. | ||
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| + | # Mabee PM, Ashburner M, Cronk Q, Gkoutos GV, Haendel M, Segerdell E, Mungall C, and Westerfield M. Phenotype ontologies: the bridge between genomics and evolution. Trends Ecol Evol 2007 Jul; 22(7) 345-50. [http://dx.doi.org/10.1016/j.tree.2007.03.013 doi:10.1016/j.tree.2007.03.013] | ||
| + | # Mabee PM, Arratia G, Coburn M, Haendel M, Hilton EJ, Lundberg JG, Mayden RL, Rios N, and Westerfield M. Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish. J Exp Zoolog B Mol Dev Evol 2007 Jun 28. [http:dx.doi.org/10.1002/jez.b.21181 doi:10.1002/jez.b.21181] | ||
| + | # Haendel, M.A., Neuhaus, F., Osumi-Sutherland, D.S., Mabee, P.M., Mejino J.L.V., Mungall, C.J., and Smith, B. (2008) [[Media:Caroreprint.pdf|CARO - The Common Anatomy Reference Ontology]]. ''In:'' Albert Burger, Duncan Davidson and Richard Baldock (Editors): ''Anatomy Ontologies for Bioinformatics: Principles and Practice''. ISBN 978-1-84628-884-5. | ||
==Participants== | ==Participants== | ||
Revision as of 16:59, 23 August 2007
Needs Analysis Workshop
A workshop hosted by the National Evolutionary Synthesis Center (NESCent).
Location and Date
Venue: National Evolutionary Synthesis Center (NESCent) (directions, also see information for visitors)
Date: September 17-18, 2007
Organizers: Paula Mabee, Monte Westerfield, Todd Vision, and Hilmar Lapp
Introduction
We are developing the first informatics system to integrate evolutionary, anatomical, developmental, and genetics data. Such a system will serve the community of developmental and evolutionary biologists by providing web-based access to integrated information.
This workshop engages scientists from the fields of morphology, developmental and evolutionary biology, genetics, and ichthyology to collaboratively develop, refine, and prioritize how the research community will be able to use this system. The goal of the workshop is to develop use-cases, or driving biological research questions that push the limits of knowledge in the developmental and evolutionary biology fields. These will in turn drive the development of the database and web-based interfaces.
The workshop will also provide an interesting opportunity to brainstorm about the informatics tools and data required to push beyond these limits, thus fostering new discoveries at the interface between evolution and developmental genetics.
Agenda
Monday, August 17
To be added soon.
Tuesday, August 18
To be added soon.
Logistics
- For long-distance participants, the hotel is the Millenium Hotel (2800 Campus Walk Ave, Durham, NC 27705; tel. (919) 383-8575)
- For dining & entertainment, NESCent is right across from Ninth Street
- For the venue, NESCent is in the historic Erwin Mills building (directions)
Reading
- We have started to use the tag "phenomap" on Connotea. Everyone is welcome to suggest references by using this tag.
- Mabee PM, Ashburner M, Cronk Q, Gkoutos GV, Haendel M, Segerdell E, Mungall C, and Westerfield M. Phenotype ontologies: the bridge between genomics and evolution. Trends Ecol Evol 2007 Jul; 22(7) 345-50. doi:10.1016/j.tree.2007.03.013
- Mabee PM, Arratia G, Coburn M, Haendel M, Hilton EJ, Lundberg JG, Mayden RL, Rios N, and Westerfield M. Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish. J Exp Zoolog B Mol Dev Evol 2007 Jun 28. [http:dx.doi.org/10.1002/jez.b.21181 doi:10.1002/jez.b.21181]
- Haendel, M.A., Neuhaus, F., Osumi-Sutherland, D.S., Mabee, P.M., Mejino J.L.V., Mungall, C.J., and Smith, B. (2008) CARO - The Common Anatomy Reference Ontology. In: Albert Burger, Duncan Davidson and Richard Baldock (Editors): Anatomy Ontologies for Bioinformatics: Principles and Practice. ISBN 978-1-84628-884-5.
Participants
Members of the project team are in bold font.
| Name | Institution |
|---|---|
| Arhat Abzhanov | Department of Organismic and Evolutionary Biology, Harvard University |
| Jim Balhoff | NESCent |
| Wasila Dahdul | Department of Ichthyology, Academy of Natural Sciences |
| Jim Hanken | Museum of Comparative Zoology, Harvard University |
| Hopi Hoekstra | Department of Organismic and Evolutionary Biology, Harvard University |
| Hans Hofmann | Dept. Integrative Biology, University of Texas at Austin |
| Elizabeth Jockusch | Department of Ecology & Evolutionary Biology, University of Connecticut |
| Elizabeth Kellogg | Dept. of Biology, University of Missouri - St. Louis |
| Chuck Kimmel | Institute of Neuroscience, University of Oregon |
| Hilmar Lapp | NESCent |
| John Lundberg | Department of Ichthyology, Academy of Natural Sciences |
| Paula Mabee | University of South Dakota |
| Peter Midford | Dept. of Ecology and Evolutionary Biology, Univ. of Kansas |
| Gavin Naylor | Dept. of Biological Science, Florida State University |
| David Stern | Department of Ecology and Evolutionary Biology, Princeton University |
| Todd Vision | NESCent, and Department of Biology, University of North Carolina at Chapel Hill |
| Gunter Wagner | Yale University |
| Monte Westerfield | Zebrafish Information Network (ZFIN) and Institute of Neuroscience, University of Oregon |
