Difference between revisions of "Software roadmap"
From phenoscape
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==Phenotype annotation editor== | ==Phenotype annotation editor== | ||
===Enhance Phenote with necessary features to be productively and efficiently used by curators -- March 2008 (first Data Jamboree)=== | ===Enhance Phenote with necessary features to be productively and efficiently used by curators -- March 2008 (first Data Jamboree)=== | ||
| − | * '''[complete]''' Initial Phenote configuration for PhenoScape data model | + | * '''[complete]''' Initial Phenote configuration for PhenoScape data model. |
| − | * '''[complete]''' Specimen List window allowing curators to repeatedly choose one or more taxa for EQ annotation | + | * '''[complete]''' Specimen List window allowing curators to repeatedly choose one or more taxa for EQ annotation. |
| − | * '''[complete]''' Phylogeny view for selecting taxa to annotate | + | * '''[complete]''' Phylogeny view for selecting taxa to annotate. |
| − | * '''[complete]''' Search field to filter table rows | + | * '''[complete]''' Search field to filter table rows. |
| − | * '''[complete]''' Ontology mode in search field for more advanced table filtering | + | * '''[complete]''' Ontology mode in search field for more advanced table filtering. |
| − | * '''[complete]''' Configuration for editing homology annotations | + | * '''[complete]''' Configuration for editing homology annotations. |
| − | * '''[complete]''' Transition PhenoScape components to Phenote 2 docking windows interface | + | * '''[complete]''' Transition PhenoScape components to Phenote 2 docking windows interface. |
* '''[complete]''' Use standard menus and keyboard shortcuts for Open, Save, Quit, Cut, Copy, Paste, etc. | * '''[complete]''' Use standard menus and keyboard shortcuts for Open, Save, Quit, Cut, Copy, Paste, etc. | ||
* '''[complete]''' Improved document saving functionality. User should be able to quickly save a document to the same file it was opened from. | * '''[complete]''' Improved document saving functionality. User should be able to quickly save a document to the same file it was opened from. | ||
| − | * '''[complete]''' Rework Specimen List as Taxon List: each taxon has multiple specimens which can be picked from during annotation as supporting evidence | + | * '''[complete]''' Rework Specimen List as Taxon List: each taxon has multiple specimens which can be picked from during annotation as supporting evidence. |
| − | * Choose museum code from pick list when entering specimen IDs | + | * Choose museum code from pick list when entering specimen IDs. |
| − | * Character matrix view of annotations: Taxon by Entity+Attribute | + | * Character matrix view of annotations: Taxon by Entity+Attribute. |
===Post-data jamboree revision -- May 2008=== | ===Post-data jamboree revision -- May 2008=== | ||
Revision as of 20:13, 5 February 2008
Contents
Phenotype annotation editor
Enhance Phenote with necessary features to be productively and efficiently used by curators -- March 2008 (first Data Jamboree)
- [complete] Initial Phenote configuration for PhenoScape data model.
- [complete] Specimen List window allowing curators to repeatedly choose one or more taxa for EQ annotation.
- [complete] Phylogeny view for selecting taxa to annotate.
- [complete] Search field to filter table rows.
- [complete] Ontology mode in search field for more advanced table filtering.
- [complete] Configuration for editing homology annotations.
- [complete] Transition PhenoScape components to Phenote 2 docking windows interface.
- [complete] Use standard menus and keyboard shortcuts for Open, Save, Quit, Cut, Copy, Paste, etc.
- [complete] Improved document saving functionality. User should be able to quickly save a document to the same file it was opened from.
- [complete] Rework Specimen List as Taxon List: each taxon has multiple specimens which can be picked from during annotation as supporting evidence.
- Choose museum code from pick list when entering specimen IDs.
- Character matrix view of annotations: Taxon by Entity+Attribute.
Post-data jamboree revision -- May 2008
- features?
Unscheduled features
- Annotation using temporary terms, when an appropriate term is not available in an ontology. Ability to update these terms to official term once it is available.
- Make DAG view work browsing entire ontology, with drag-and-drop to fields.
- Allow user to see what version of ontology is being used.
- Create lookup-enabled Publication field (enter DOI or PMID).
Phenote integration with PhenoScape web application and database
- Determine whether to integrate standalone Phenote application with web database, or migrate components into web application
Ontology editor
Curators begin by using OBO-Edit to view and edit project ontologies -- August 2007
- [complete] Curators are using OBO-Edit successfully
