Difference between revisions of "Software roadmap"
From phenoscape
(→Enhance Phenote with necessary features to be productively and efficiently used by curators -- March 2008 (first Data Jamboree)) |
|||
| Line 24: | Line 24: | ||
===Phenote integration with PhenoScape web application and database=== | ===Phenote integration with PhenoScape web application and database=== | ||
| − | * Determine whether to integrate standalone Phenote application with web database, or migrate components into web application | + | * Determine whether to integrate standalone Phenote application with web database, or migrate components into web application. |
==Ontology editor== | ==Ontology editor== | ||
===Curators begin by using OBO-Edit to view and edit project ontologies -- August 2007=== | ===Curators begin by using OBO-Edit to view and edit project ontologies -- August 2007=== | ||
| − | * '''[complete]''' Curators are using OBO-Edit successfully | + | * '''[complete]''' Curators are using OBO-Edit successfully. |
==A database and web application to store and query the taxonomies, ontologies, and phenotype data== | ==A database and web application to store and query the taxonomies, ontologies, and phenotype data== | ||
Revision as of 20:14, 5 February 2008
Contents
Phenotype annotation editor
Enhance Phenote with necessary features to be productively and efficiently used by curators -- March 2008 (first Data Jamboree)
- [complete] Initial Phenote configuration for PhenoScape data model.
- [complete] Specimen List window allowing curators to repeatedly choose one or more taxa for EQ annotation.
- [complete] Phylogeny view for selecting taxa to annotate.
- [complete] Search field to filter table rows.
- [complete] Ontology mode in search field for more advanced table filtering.
- [complete] Configuration for editing homology annotations.
- [complete] Transition PhenoScape components to Phenote 2 docking windows interface.
- [complete] Use standard menus and keyboard shortcuts for Open, Save, Quit, Cut, Copy, Paste, etc.
- [complete] Improved document saving functionality. User should be able to quickly save a document to the same file it was opened from.
- [complete] Rework Specimen List as Taxon List: each taxon has multiple specimens which can be picked from during annotation as supporting evidence.
- Choose museum code from pick list when entering specimen IDs.
- Character matrix view of annotations: Taxon by Entity+Attribute.
Post-data jamboree revision -- May 2008
- features?
Unscheduled features
- Annotation using temporary terms, when an appropriate term is not available in an ontology. Ability to update these terms to official term once it is available.
- Make DAG view work browsing entire ontology, with drag-and-drop to fields.
- Allow user to see what version of ontology is being used.
- Create lookup-enabled Publication field (enter DOI or PMID).
Phenote integration with PhenoScape web application and database
- Determine whether to integrate standalone Phenote application with web database, or migrate components into web application.
Ontology editor
Curators begin by using OBO-Edit to view and edit project ontologies -- August 2007
- [complete] Curators are using OBO-Edit successfully.
