Difference between revisions of "Data Repository and Data Services"
From phenoscape
(→Web services) |
(→Term info) |
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'''Returns''' | '''Returns''' | ||
| − | + | JSON: | |
| − | + | <javascript> | |
| + | { | ||
| + | "id" : "TAO:0001700", | ||
| + | "name" : "caudal-fin stay", | ||
| + | "definition" : "Bone that is located anterior to the caudal procurrent rays. Caudal fin stays are unpaired bone." | ||
| + | "parents" : | ||
| + | [ | ||
| + | { | ||
| + | "relation" : "OBO_REL:is_a", | ||
| + | "id" : "TAO:0001514", | ||
| + | "name" : "bone" | ||
| + | }, | ||
| + | { | ||
| + | "relation" : "OBO_REL:part_of", | ||
| + | "id" : "TAO:0000862", | ||
| + | "name" : "caudal fin skeleton" | ||
| + | } | ||
| + | ], | ||
| + | "children" : [] // if there are children should be same format as parents | ||
| + | } | ||
| + | // how should xrefs, etc. be represented, property_value definitions? | ||
| + | </javascript> | ||
If there is no term with the given ID, the service should return "404 Not Found". | If there is no term with the given ID, the service should return "404 Not Found". | ||
===Autocomplete=== | ===Autocomplete=== | ||
Revision as of 18:13, 10 November 2008
Data loader
A data loader application to refresh the data in the Phenoscape database on a daily basis is under development. The application is being developed as a Perl module which:
- Downloads curated NeXML files from the Phenoscape SVN repositories
- Drops and recreates the database
- Loads the requisite ontologies into the database
- Loads the data from the curated NeXML files into the database, and
- Invokes the OBD reasoner to elicit implicit information from the data and adds them to the database
Web services
Term info
URI
../info/{termID}
Returns JSON: <javascript> {
"id" : "TAO:0001700",
"name" : "caudal-fin stay",
"definition" : "Bone that is located anterior to the caudal procurrent rays. Caudal fin stays are unpaired bone."
"parents" :
[
{
"relation" : "OBO_REL:is_a",
"id" : "TAO:0001514",
"name" : "bone"
},
{
"relation" : "OBO_REL:part_of",
"id" : "TAO:0000862",
"name" : "caudal fin skeleton"
}
],
"children" : [] // if there are children should be same format as parents
} // how should xrefs, etc. be represented, property_value definitions? </javascript>
If there is no term with the given ID, the service should return "404 Not Found".
