Difference between revisions of "Roadmap for first iteration"
From phenoscape
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===Jim=== | ===Jim=== | ||
* Document interface design requirements on wiki | * Document interface design requirements on wiki | ||
| − | * Investigate additional data service needs required by interface | + | * Investigate and begin documenting additional data service needs required by interface |
* Start Rails web interface project | * Start Rails web interface project | ||
* Write EQ count script using Ruby | * Write EQ count script using Ruby | ||
| + | |||
===Cartik=== | ===Cartik=== | ||
* Set up Eclipse project for Restlet based web service application in OBD-WS | * Set up Eclipse project for Restlet based web service application in OBD-WS | ||
Revision as of 21:15, 11 November 2008
This is a development roadmap for the first production iteration of the Phenoscape database and web interface, for introduction at the SICB 2009 meeting.
Contents
Nov. 10-14
Jim
- Document interface design requirements on wiki
- Investigate and begin documenting additional data service needs required by interface
- Start Rails web interface project
- Write EQ count script using Ruby
Cartik
- Set up Eclipse project for Restlet based web service application in OBD-WS
- Begin implementing Term Info service
- Write code to parse ZFIN phenotype data and load into OBD
- See http://zfin.org/zf_info/downloads.html#phenotype
- Data: http://zfin.org/data_transfer/Downloads/pheno_obo.txt
- should use "exhibits" relation
Nov. 17-21
Jim
- Document data retrieval web service specifications
- Anatomy
- Taxon
- Genes
- Implement Rails app skeleton and begin coding front page
- Implement reusable JavaScript term info panel
- Address file merging issues with Paula.
Cartik
- Complete Term Info service
- Deploy OBD-WS application; continue deploying in-progress builds.
- Include real or dummy info and autocomplete services.
- Enhance OBD data loader pipeline to perform pre-processing of ZFA ontology, replacing xrefs with is_a links to TAO
- These xrefs seem to still be in TAO - may have to fix that or work around
- Implement autocomplete service
Nov. 24-28
Jim
- mostly on vacation
Cartik
- Provide dummy Anatomy data service(s).
- Implement data service(s) related to Anatomy (requirements documented Nov. 17-21).
Dec. 1-5
Jim
- Implement anatomy UI.
- Begin using autocomplete and term info services in all so-far developed user interfaces.
Cartik
- Provide all defined services as dummy services if not yet implemented.
- Complete implementing Anatomy data services.
- Begin implementing Taxon data services.
Dec. 8-12
Jim
- Complete anatomy user interface.
- Begin implementing taxon user interface.
Cartik
Dec. 15-19
Jim
- Complete taxon user interface.
- Implement and complete gene user interface.
Cartik
Outcome
Query UI
- Anatomy
- Taxon
- Gene
Data Content
- Ontologies
- Anatomy ontologies linkage
- Phenoscape annotations (NeXML)
- ZFIN annotations (tab-delimited)
