Difference between revisions of "Map Qualities on Tree"

From phenoscape
(Map Qualities on Tree)
(Map Qualities on Tree)
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== Map Qualities on Tree ==
+
= Map Qualities on Tree =
  
=== Version 2 ===
+
== Version 3 ==
==== Access from Entity Page via tree button ====
+
=== Access from Entity Page via tree button ===
 +
=== Display Qualities One at a time using a Scroll ===
 +
 
 +
== Version 2 ==
 +
=== Access from Entity Page via tree button ===
  
 
[[Image:MapQualities1.png]]
 
[[Image:MapQualities1.png]]
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[[Image:MapQualities2.png]]
 
[[Image:MapQualities2.png]]
  
==== Taxonomic Scope ====
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=== Taxonomic Scope ===
  
====Display qualities using a grid of colored tiles====
+
=== Display qualities using a grid of colored tiles===
  
 
* Qualities are displayed with consistent location and color in the grid
 
* Qualities are displayed with consistent location and color in the grid
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[[Image:ColorGridOption1.png]]
 
[[Image:ColorGridOption1.png]]
  
====Display qualities using colored icons strung along branches====
+
===Display qualities using icons strung along branches===
 
* Qualities are displayed with consistent icon, color and relative position along branches
 
* Qualities are displayed with consistent icon, color and relative position along branches
 
* As above, desaturated colors are used for inferred qualities
 
* As above, desaturated colors are used for inferred qualities
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=== Version 1 ===
+
== Version 1 ==
====Display qualities using a grid of colored tiles====
+
=== Display qualities using a grid of colored tiles ===
  
 
* Qualities are displayed with consistent location and color in the grid
 
* Qualities are displayed with consistent location and color in the grid
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[[Image:ColorGridOption1.png]]
 
[[Image:ColorGridOption1.png]]
  
====Display qualities using colored icons strung along branches====
+
=== Display qualities using colored icons strung along branches ===
 
* Qualities are displayed with consistent icon, color and relative position along branches
 
* Qualities are displayed with consistent icon, color and relative position along branches
 
* As above, desaturated colors are used for inferred qualities
 
* As above, desaturated colors are used for inferred qualities
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[[Image:IconsOnBranchOption.png]]
 
[[Image:IconsOnBranchOption.png]]
  
=== Version 0 ===
+
== Version 0 ==
==== Display qualities using text icons adjacent to taxon names====
+
=== Display qualities using text icons adjacent to taxon names ===
  
 
* user enters any entity term
 
* user enters any entity term

Revision as of 16:58, 22 January 2010

Map Qualities on Tree

Version 3

Access from Entity Page via tree button

Display Qualities One at a time using a Scroll

Version 2

Access from Entity Page via tree button

Error creating thumbnail: Unable to save thumbnail to destination
Error creating thumbnail: Unable to save thumbnail to destination

Taxonomic Scope

Display qualities using a grid of colored tiles

  • Qualities are displayed with consistent location and color in the grid
  • Desaturated colors are used for qualities of phenotypes that are inferred, rather than annotated
    • Note annotation to Ictaluridae in this and next candidate example
  • The 16 tile designs are intended to support expansion of the list of qualities used in curation - as has already happened.
Error creating thumbnail: Unable to save thumbnail to destination

Display qualities using icons strung along branches

  • Qualities are displayed with consistent icon, color and relative position along branches
  • As above, desaturated colors are used for inferred qualities
  • Additional icons may be added
Error creating thumbnail: Unable to save thumbnail to destination


Version 1

Display qualities using a grid of colored tiles

  • Qualities are displayed with consistent location and color in the grid
  • Desaturated colors are used for qualities of phenotypes that are inferred, rather than annotated
    • Note annotation to Ictaluridae in this and next candidate example
  • The 16 tile designs are intended to support expansion of the list of qualities used in curation - as has already happened.
Error creating thumbnail: Unable to save thumbnail to destination

Display qualities using colored icons strung along branches

  • Qualities are displayed with consistent icon, color and relative position along branches
  • As above, desaturated colors are used for inferred qualities
  • Additional icons may be added
Error creating thumbnail: Unable to save thumbnail to destination

Version 0

Display qualities using text icons adjacent to taxon names

  • user enters any entity term
  • each of the standard upper-level PATO qualities has some icon
  • each node of tree is annotated with icons for which kinds of phenotypes are exhibited by that node
  • so if you just put in "bone", you could get a "shape" icon at a node for any bone shape phenotype (basihyal bone round, vertebra 1 flat, etc.)

Trees3.png