Difference between revisions of "Knowledgebase Reports"
From phenoscape
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** [http://kb-dev.phenoscape.org/OBD-WS/report/count/publications?query=%7B%22phenotype%22%3A%5B%7B%22entity%22%3A%7B%22id%22%3A%22TAO%3A0001184%22%2C%22including_parts%22%3A%20true%7D%7D%5D%7D pelvic fin and parts only] | ** [http://kb-dev.phenoscape.org/OBD-WS/report/count/publications?query=%7B%22phenotype%22%3A%5B%7B%22entity%22%3A%7B%22id%22%3A%22TAO%3A0001184%22%2C%22including_parts%22%3A%20true%7D%7D%5D%7D pelvic fin and parts only] | ||
** [http://kb-dev.phenoscape.org/OBD-WS/report/count/publications?query=%7B%22phenotype%22%3A%5B%7B%22entity%22%3A%7B%22id%22%3A%22TAO%3A0001161%22%2C%22including_parts%22%3A%20true%7D%7D%5D%7D pectoral fin and parts only] | ** [http://kb-dev.phenoscape.org/OBD-WS/report/count/publications?query=%7B%22phenotype%22%3A%5B%7B%22entity%22%3A%7B%22id%22%3A%22TAO%3A0001161%22%2C%22including_parts%22%3A%20true%7D%7D%5D%7D pectoral fin and parts only] | ||
| − | ** [http://kb-dev.phenoscape.org/OBD-WS/report/count/publications?query=%7B%22phenotype%22%3A%5B%7B%22entity%22%3A%7B%22id%22%3A%22TAO%3A0000434%22%2C%22including_parts%22%3A%20true%7D%7D%5D%7D skeletal system and parts only] | + | ** [http://kb-dev.phenoscape.org/OBD-WS/report/count/publications?query=%7B%22phenotype%22%3A%5B%7B%22entity%22%3A%7B%22id%22%3A%22TAO%3A0000434%22%2C%22including_parts%22%3A%20true%7D%7D%5D%7D skeletal system and parts only] (unfortunately this one seems to be timing out - I will try to speed it up --[[User:Jpb15|jim]] 17:05, 23 July 2010 (EDT)) |
* [http://kb-dev.phenoscape.org/OBD-WS/report/count/characters/published Count of all published characters] | * [http://kb-dev.phenoscape.org/OBD-WS/report/count/characters/published Count of all published characters] | ||
* [http://kb-dev.phenoscape.org/OBD-WS/report/count/characters/annotated Count of all annotated characters] | * [http://kb-dev.phenoscape.org/OBD-WS/report/count/characters/annotated Count of all annotated characters] | ||
Revision as of 21:05, 23 July 2010
Contents
Reports on production Phenoscape KB
This contains consistency-checked and author-checked files (from 'phenex-files'). It is updated irregularly (every 1-3 months).
- Relational qualities without related entities
- Monadic qualities with related entities
- Characters with only one annotated state
- Presence/absence characters without both states
Reports on kb-staging
This contains files that are going into production database (from 'phenex-files'); some are updated daily by curators. It is updated nightly.
- Relational qualities without related entities
- Monadic qualities with related entities
- Characters with only one annotated state
- Presence/absence characters without both states
Reports on kb-extra
This database is equivalent to staging but also includes Sandrine's data files and all incomplete files ('incomplete-files' + 'phenex-files'). It is updated nightly.
- Relational qualities without related entities
- Monadic qualities with related entities
- Characters with only one annotated state
- Presence/absence characters without both states
Reports on kb-dev
This database is used for active development and may often be broken. It should not be relied upon for everyday use.
Currently, this database is equivalent to staging but also includes Sandrine's data files.
- Date on which these data were loaded
- Count of annotated publications, by higher level taxon
- pelvic fin and parts only
- pectoral fin and parts only
- skeletal system and parts only (unfortunately this one seems to be timing out - I will try to speed it up --jim 17:05, 23 July 2010 (EDT))
- Count of all published characters
- Count of all annotated characters
- Count of all published character states
- Count of all annotated character states
- Count of publication taxa (OTUs) across all publications
- Count of annotated taxa (valid taxa, i.e. terms in TTO)
- Count of EQ statements curated (state to phenotype links)
- Count of distinct phenotypes used in taxon annotations
- Count of curated phenotype assertions (taxon-phenotype annotations)
- Count of distinct phenotype assertions (taxon-phenotype annotations)
- Count of annotated genes
- Count of genotype-phenotype assertions (including morpholinos as genotypes)
- Count of distinct gene-phenotype assertions (implied by genotype assertions)
- Count of distinct phenotypes used in gene annotations
