Difference between revisions of "Knowledgebase Reports"
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This database is used for active development and may often be broken. It should usually not be relied upon for everyday use (however as of Dec 17, 2010, it is the most up-to-date and stable system). | This database is used for active development and may often be broken. It should usually not be relied upon for everyday use (however as of Dec 17, 2010, it is the most up-to-date and stable system). | ||
| − | This contains all of the data files found [http://phenoscape.svn.sourceforge.net/viewvc/phenoscape/trunk/data/phenex-files/ here]. It contains the latest public versions of all ontologies at the time the data were loaded, with the exception of PATO (it currently contains an [http://www.duke.edu/~jpb15/quality.obo experimental PATO revision]). | + | This contains all of the data files found [http://phenoscape.svn.sourceforge.net/viewvc/phenoscape/trunk/data/phenex-files/ here]. It contains the latest public versions of all ontologies at the time the data were loaded, with the exception of PATO (it currently contains an [http://www.duke.edu/~jpb15/quality.obo experimental PATO revision]). It will have the tao with the vao ('new tao') for testing. |
* [http://kb-dev.phenoscape.org/OBD-WS/timestamp/ Date on which these data were loaded] | * [http://kb-dev.phenoscape.org/OBD-WS/timestamp/ Date on which these data were loaded] | ||
Revision as of 19:35, 17 December 2010
Reports on production Phenoscape KB
This contains consistency-checked and author-checked files (from 'phenex-files'). It is updated irregularly (every 1-3 months). This contains all of the data files found here. It contains the latest public versions of all ontologies at the time the data were loaded, with the exception of PATO (it currently contains an experimental PATO revision), and TAO (it contains an experimental TAO incorporating the new VAO - this will be removed at the next update of this system).
- Date on which these data were loaded
- Count of annotated publications, by higher level taxon
- Count of all published characters
- Count of all annotated characters
- Count of all published character states
- Count of all annotated character states
- Count of publication taxa (OTUs) across all publications
- Count of annotated taxa (valid taxa, i.e. terms in TTO)
- Count of EQ statements curated (state to phenotype links)
- Count of distinct phenotypes used in taxon annotations
- Count of curated phenotype assertions (taxon-phenotype annotations)
- Count of distinct phenotype assertions (taxon-phenotype annotations)
- Count of annotated genes
- Count of genotype-phenotype assertions (including morpholinos as genotypes)
- Count of distinct gene-phenotype assertions (implied by genotype assertions)
- Count of distinct phenotypes used in gene annotations
Reports on kb-staging
kb-staging is currently offline for maintenance. This will be where old tao (with no vao) will be running (so that Wasila and co. can test old tao against new tao (with vao, in kb-dev))
Reports on kb-dev
This database is used for active development and may often be broken. It should usually not be relied upon for everyday use (however as of Dec 17, 2010, it is the most up-to-date and stable system).
This contains all of the data files found here. It contains the latest public versions of all ontologies at the time the data were loaded, with the exception of PATO (it currently contains an experimental PATO revision). It will have the tao with the vao ('new tao') for testing.
- Date on which these data were loaded
- Count of annotated publications, by higher level taxon
- Count of all published characters
- Count of all annotated characters
- Count of all published character states
- Count of all annotated character states
- Count of publication taxa (OTUs) across all publications
- Count of annotated taxa (valid taxa, i.e. terms in TTO)
- Count of EQ statements curated (state to phenotype links)
- Count of distinct phenotypes used in taxon annotations
- Count of curated phenotype assertions (taxon-phenotype annotations)
- Count of distinct phenotype assertions (taxon-phenotype annotations)
- Count of annotated genes
- Count of genotype-phenotype assertions (including morpholinos as genotypes)
- Count of distinct gene-phenotype assertions (implied by genotype assertions)
- Count of distinct phenotypes used in gene annotations
kb-old
This database has the old interface - its data are frozen as of May 2010.
