Links

Links relevant to the project

Ontologies

National Center for Biomedical Ontology

• Ontologies from NCBO
• Ontology of Zebrafish Anatomy and Development
• Common Anatomy Reference Ontology (CARO) (also available in OWL format)
• Maintaining inter-ontology relations between species specific anatomy ontologies and CL/GO/CARO
• OBD Phenotype file formats - Includes standards and schemas for PhenoSyntax and PhenoXML

Data typed using phenotype ontology

• OBD data and schema downloads

Fish resources

• Zebrafish Information Network (ZFIN)
• DeepFin
• Digital Fish Library
• Catalog of Fishes
• FishBase

Morphology image database resources

• Morphbank
• MorphoBank
• Digimorph
• Morphster

Software

• Phenote
• OBO-Edit

Bibliography

We also maintain a list of references on Connotea, using the tag "phenoscape". This list may be more up-to-date than the bibliography below. Anyone can easily recommend references (and in fact any site or resource) to us simply by tagging it with "phenoscape" in Connotea.

Please see also our publications page for manuscripts and posters arising from the project.

References

<biblio>

1. rosen1974 Rosen DE. 1974. Phylogeny and zoogeography of salmoniform fishes and relationships of Lepidogalaxias salamandroides. Bulletin of the American Museum of Natural History 153:267-325.
2. finkfink1981 Fink SV, Fink WL. 1981. Interrelationships of the ostariophysan fishes (Teleostei). Zoological Journal of the Linnean Society 72(4):297-353.
3. finkfink1997 Fink, S.V. and W.L. Fink. 1997. Interrelationships of the Ostariophysi. In: Interrelationships of Fishes, M. Stiassney, L. Parenti and D. Johnson (Eds). Academic Press, 209-249.
4. schulz2007 pmid=17448242

</biblio>