Knowledgebase mockups

From phenoscape
Revision as of 17:46, 15 May 2009 by Jpb15 (talk | contribs) (Grouping data by using an ontology tree view)

Grouping data by using an ontology tree view

Phenotype results

This would be an enhancement to the results currently displayed on a page like http://kb.phenoscape.org/phenotype/evo/TTO:10930/TAO:0000326/PATO:0000070/

The nearest common ancestor term of the annotated taxon terms is used as the root of the tree display. The only leaf terms displayed are those with annotations. Internal nodes show the union of the annotations to their descendant nodes.

Phenotype ontology tree.png

=Comments

  • From Paula: start off with taxon tree semi-collapsed (at genus level).
  • Put the number of taxa for which there are annotations in parens behind, e.g., the genus name.

Search summary results

This would be an enhancement to the Phenotypes results currently displayed on a page like http://kb.phenoscape.org/search/anatomy/TAO:0000376

The leftmost column is intended to represent a disclosable tree display. The nearest common ancestor of the represented annotated anatomy terms is used as the root of the tree display. Each anatomy term has a flat list of the qualities annotated for it. Don't pay too much attention to the dummy numbers given in these results.

Root anatomy term "infraorbital" collapsed:

Infraorbital closed ontology tree.png

Root anatomy term "infraorbital" expanded:

Infraorbital open ontology tree.png

Possible further enhancement to page capabilities - redisplay data on a quality tree. The included results would be somewhat different.

Nearest quality ancestor collapsed:

Quality closed ontology tree.png

Quality ancestor expanded:

Quality open ontology tree.png

Display of citation and free-text basis for annotations

Here is a list of specific phenotype annotations resulting from a search. There is an added "Source(s)" link next to each one. The yellow bubble is not part of the page.

Phenotypes and sources.png

If the user clicks a "Source(s)" link, the citation information for a particular taxon-phenotype annotation is retrieved and displayed in a page overlay.

Phenotypes and sources open.png

A particular taxon-phenotype annotation may have been asserted from more than one publication:

Phenotypes and 2 sources open.png

Simple display of homology information

Anatomy pages can make use of homology information from the database to list possible homologous terms. This mockup adds a list of homologous terms to the term info panel. The user can click one of these term links to go to the anatomy page about that term.

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