Links
From phenoscape
Contents
Links relevant to the project
Ontologies
National Center for Biomedical Ontology
- Ontologies from NCBO
- Ontology of Zebrafish Anatomy and Development
- Common Anatomy Reference Ontology (CARO) (also available in OWL format)
- Maintaining inter-ontology relations between species specific anatomy ontologies and CL/GO/CARO
- OBD Phenotype file formats - Includes standards and schemas for PhenoSyntax and PhenoXML
Data typed using phenotype ontology
Fish resources
Morphology image database resources
Software
Bibliography
We also maintain a list of references on Connotea, using the tag "phenomap". This list may be more up-to-date than the bibliography below.
Anyone can easily recommend references (and in fact any site or resource) to us simply by tagging it with "phenomap" in Connotea.
Reprints
- Haendel, M.A., Neuhaus, F., Osumi-Sutherland, D.S., Mabee, P.M., Mejino J.L.V., Mungall, C.J., and Smith, B. (2008) CARO - The Common Anatomy Reference Ontology. In: Albert Burger, Duncan Davidson and Richard Baldock (Editors): Anatomy Ontologies for Bioinformatics: Principles and Practice. ISBN 978-1-84628-884-5.
- Mabee PM et al (2007). Phenotype ontologies: the bridge between genomics and evolution. Trends Ecol Evol mabee2007
- Schulz et al (2007). Spatial location and its relevance for terminological inferences in bio-ontologies. BMC Bioinformatics 2007, 8:134 doi:10.1186/1471-2105-8-134
References
<biblio>
- mabee2007 pmid=17416439
</biblio>
