Knowledgebase mockups (Nov 2009)

Publications

Integration of publication data across site.

Publication results on term search pages

• this shows an entity page (entopterygoid) - could have similar layout on taxon and gene searches
• for each row (phenotype class) - see how many publication are linked to any EQs of that type
• click one of the count links to go to a page listing those publications

List of publications

• click one of the links to go to that publication's detail page

Publication detail page

• matrix will usually be much bigger - will be scrollable
• click column header or cell links to go to a phenotype details page showing all related EQs grouped by taxon (as on existing phenotype pages)

Tree mapping

Map 2 phenotypes on tree

• user can enter phenotype specification for each "state"
• see on tree which branches exhibit one or both of the phenotypes
• Do user's want the tree "pruned"? Or show branches without annotations also? could be a lot of taxa

Same interface

• shows that the 2 phenotypes don't have to be obvious alternatives

Map phenotypes of a given entity on tree

• user enters any entity term
• each of the standard upper-level PATO qualities has some icon
• each node of tree is annotated with icons for which kinds of phenotypes are exhibited by that node
• so if you just put in "bone", you could get a "shape" icon at a node for any bone shape phenotype (basihyal bone round, vertebra 1 flat, etc.)

Phenotype queries