Difference between revisions of "Data Repository and Data Services"

From phenoscape
(Term info)
(Term info)
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'''Returns'''
 
'''Returns'''
 +
 
JSON:
 
JSON:
 
<javascript>
 
<javascript>
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     "name" : "caudal-fin stay",
 
     "name" : "caudal-fin stay",
 
     "definition" : "Bone that is located anterior to the caudal procurrent rays. Caudal fin stays are unpaired bone."
 
     "definition" : "Bone that is located anterior to the caudal procurrent rays. Caudal fin stays are unpaired bone."
     "parents" :  
+
     "parents" :
 
     [
 
     [
 
         {
 
         {

Revision as of 18:13, 10 November 2008

Data loader

A data loader application to refresh the data in the Phenoscape database on a daily basis is under development. The application is being developed as a Perl module which:

  1. Downloads curated NeXML files from the Phenoscape SVN repositories
  2. Drops and recreates the database
  3. Loads the requisite ontologies into the database
  4. Loads the data from the curated NeXML files into the database, and
  5. Invokes the OBD reasoner to elicit implicit information from the data and adds them to the database

Web services

Term info

URI

../info/{termID}

Returns

JSON: <javascript> {

   "id" : "TAO:0001700",
   "name" : "caudal-fin stay",
   "definition" : "Bone that is located anterior to the caudal procurrent rays. Caudal fin stays are unpaired bone."
   "parents" :
   [
       {
           "relation" : "OBO_REL:is_a",
           "id" : "TAO:0001514",
           "name" : "bone"
       },
       {
           "relation" : "OBO_REL:part_of",
           "id" : "TAO:0000862",
           "name" : "caudal fin skeleton"
       }
   ],
   "children" : [] // if there are children should be same format as parents

} // how should xrefs, etc. be represented, property_value definitions? </javascript>

If there is no term with the given ID, the service should return "404 Not Found".

Autocomplete