Knowledgebase Reports

Reports on production Phenoscape KB

This contains consistency-checked and author-checked files (from 'phenex-files'). It is updated irregularly (every 1-3 months).

• Relational qualities without related entities
• Monadic qualities with related entities
• Characters with only one annotated state
• Presence/absence characters without both states

Reports on kb-staging

This contains files that are going into production database (from 'phenex-files'); some are updated daily by curators. It is updated nightly.

• Relational qualities without related entities
• Monadic qualities with related entities
• Characters with only one annotated state
• Presence/absence characters without both states

Reports on kb-extra

This database is equivalent to staging but also includes Sandrine's data files and all incomplete files ('incomplete-files' + 'phenex-files'). It is updated nightly.

• Relational qualities without related entities
• Monadic qualities with related entities
• Characters with only one annotated state
• Presence/absence characters without both states

Reports on kb-dev

This database is used for active development and may often be broken. It should not be relied upon for everyday use.

• Date on which these data were loaded
• Count of annotated publications, by higher level taxon
  • pelvic fin and parts only
  • pectoral fin and parts only
• Count of all published characters
• Count of all annotated characters
  • pelvic fin and parts only
  • pectoral fin and parts only
• Count of all published character states
• Count of all annotated character states
  • pelvic fin and parts only
  • pectoral fin and parts only
• Count of annotated taxa (valid taxa, i.e. terms in TTO)
  • pelvic fin and parts only
  • pectoral fin and parts only
• Count of publication taxa (OTUs) across all publications
• Count of EQ statements curated (state to phenotype links)
• Count of distinct phenotypes
• Count of curated phenotype assertions (taxon-phenotype annotations)
• Count of distinct phenotype assertions