Difference between revisions of "Needs Analysis Workshop/Phylogeny Breakout"

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HH – note whether in situs have been done at all for species of interest;  see which species have that data, download all the images.
 
HH – note whether in situs have been done at all for species of interest;  see which species have that data, download all the images.
 
   
 
   
CK - interested in output/reports of statistics, such as statistics for testing character correlation
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CK - interested in output/reports of statistics and quantitative measures, such as statistics for testing character correlation
  
 
HH - also independent contrasts to assess character independence
 
HH - also independent contrasts to assess character independence
 +
 +
HH - has used heat maps to visualize correlations in data sets; might be useful for this project
 +
 +
CK - time component mapped on phylogeny: overlay movie showing developmental sequence
 +
 +
WD - interest in input of your own data (unpublished) to interact with database?
 +
 +
CK/HH - yes, but challenges of data entry; perhaps a temporary repository for data similar to blast searches
 +
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MW - having a modified curator interface available for the user to enter their data and run analyses against the database

Revision as of 15:35, 19 September 2007

Participants: Monte Westerfield, Paula Mabee, Cartik Muthu, Chuck Kimmel, Wasila Dahdul, Hans Hofman


PM - what are participants most interested in?

-computing tree on the fly?

-repository of trees?

-manipulation of existing trees?

Group consensus - want the ability to deliver trees and ability to manipulate them

HH – want the ability to map as many phenotypic traits as possible; character mapping with phenotypic transitions, gains/losses, correlated changes; have sets of data mapped on tree – for example , all in situs done for a particular gene…

CK – interested in getting figures on the phylogeny

HH – note whether in situs have been done at all for species of interest; see which species have that data, download all the images.

CK - interested in output/reports of statistics and quantitative measures, such as statistics for testing character correlation

HH - also independent contrasts to assess character independence

HH - has used heat maps to visualize correlations in data sets; might be useful for this project

CK - time component mapped on phylogeny: overlay movie showing developmental sequence

WD - interest in input of your own data (unpublished) to interact with database?

CK/HH - yes, but challenges of data entry; perhaps a temporary repository for data similar to blast searches

MW - having a modified curator interface available for the user to enter their data and run analyses against the database