Roadmap for first iteration

From phenoscape
Revision as of 20:55, 12 November 2008 by Jpb15 (talk | contribs) (Cartik)

This is a development roadmap for the first production iteration of the Phenoscape database and web interface, for introduction at the SICB 2009 meeting.

Nov. 10-14

Jim

  • Document interface design requirements on wiki
  • Investigate and begin documenting additional data service needs required by interface
  • Start Rails web interface project; commit to SVN.
  • Write EQ count script, as per Paula's request, using Ruby; provide results to Phenoscape mailing list.

Cartik

  • Complete Set up Eclipse project for Restlet based web service application on personal machine, commit to OBD-WS SVN.
  • Begin implementing dummy term info and autocomplete services.

Nov. 17-21

Jim

  • Document data retrieval web service specifications
    • Anatomy
    • Taxon
    • Genes
  • Implement Rails app skeleton and code front page
  • Implement reusable JavaScript term info panel and embed in front page search interface.
  • Address NEXUS/Phenote file merging issues with Paula. Provide problematic files as NeXML to Paula and Wasila.

Cartik

  • Deploy OBD-WS application; continue deploying in-progress builds.
    • Package as WAR, deploy on Eryops.
    • Include dummy autocomplete and term info services.
  • Begin implementing live Term Info service within OBD-WS application.
  • Begin implementing live Autocomplete service within OBD-WS application.

Nov. 24-28

Jim

  • mostly on vacation

Cartik

  • Complete Term Info service
  • Complete Autocomplete service.
  • Provide dummy Anatomy, Taxon, and Gene data service(s).

Dec. 1-5

Jim

  • Implement anatomy UI.
  • Begin using autocomplete and term info services in all so-far developed user interfaces.

Cartik

Dec. 8-12

Jim

  • Complete anatomy user interface.
  • Begin implementing taxon user interface.

Cartik

  • Complete ZFIN data loading tasks.
  • Implement data service(s) related to Anatomy (requirements documented Nov. 17-21).

Dec. 15-19

Jim

  • Complete taxon user interface.
  • Implement and complete gene user interface.

Cartik

  • Complete implementing Anatomy data services.
  • Begin implementing Taxon data services.

Dec. 22 - Jan. 2 (2 weeks)

Jim

  • Mostly on vacation.

Cartik

  • Complete Taxon data services.
  • Completely implement Gene data services.

Outcome

Query UI

  • Anatomy
  • Taxon
  • Gene

Data Content

  • Ontologies
  • Anatomy ontologies linkage
  • Phenoscape annotations (NeXML)
  • ZFIN annotations (tab-delimited)