Difference between revisions of "Annotator tutorial topics"
From phenoscape
(Created page with "Agenda- topics and software for curator training: Overview of curation workflow (see Sandrine’s slides) and software involved ====Ontology development:==== Review of limb term...") |
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====Ontology development:==== | ====Ontology development:==== | ||
| − | + | Protege tutorial | |
| − | |||
====Ontology development principles:==== | ====Ontology development principles:==== | ||
| − | OBO foundry principles (orthogonality, single inheritance, versioning, etc | + | OBO foundry principles (orthogonality, single inheritance, versioning, etc...) |
| − | + | Genus-differentia definitions | |
| − | Genus-differentia definitions | ||
| − | |||
====Online resources and mailing lists (bookmark)==== | ====Online resources and mailing lists (bookmark)==== | ||
| − | Term trackers ( | + | Term trackers (PATO, RO, CARO, Uberon) |
| + | |||
OBO Foundry | OBO Foundry | ||
| + | |||
BioPortal | BioPortal | ||
| − | Mailing lists: Phenoscape-curators | + | |
| + | Mailing lists: Phenoscape-curators, obo-anatomy, obo-discuss | ||
====Curation training==== | ====Curation training==== | ||
| − | EQ annotation - Review wiki Guide to Character Annotation | + | EQ annotation - Review wiki Guide to Character Annotation |
| + | |||
Phenex | Phenex | ||
| + | |||
Matrix and free text entry in Mesquite and/OR direct import into Phenex | Matrix and free text entry in Mesquite and/OR direct import into Phenex | ||
| − | + | ||
| + | Subversion and use of SmartSVN | ||
| + | |||
Mendeley | Mendeley | ||
| + | |||
Phenoscape Curation Log in Google Docs | Phenoscape Curation Log in Google Docs | ||
| + | |||
Taxon lists update | Taxon lists update | ||
| + | |||
Endnote and publication identifiers | Endnote and publication identifiers | ||
====Ontology editing and updating==== | ====Ontology editing and updating==== | ||
| − | + | SVN, SmartSVN | |
| − | + | ||
Term request workflow; proposed ORB workflow | Term request workflow; proposed ORB workflow | ||
| − | |||
| − | |||
| − | |||
Revision as of 20:34, 29 November 2012
Agenda- topics and software for curator training: Overview of curation workflow (see Sandrine’s slides) and software involved
Contents
Ontology development:
Protege tutorial
Ontology development principles:
OBO foundry principles (orthogonality, single inheritance, versioning, etc...) Genus-differentia definitions
Online resources and mailing lists (bookmark)
Term trackers (PATO, RO, CARO, Uberon)
OBO Foundry
BioPortal
Mailing lists: Phenoscape-curators, obo-anatomy, obo-discuss
Curation training
EQ annotation - Review wiki Guide to Character Annotation
Phenex
Matrix and free text entry in Mesquite and/OR direct import into Phenex
Subversion and use of SmartSVN
Mendeley
Phenoscape Curation Log in Google Docs
Taxon lists update
Endnote and publication identifiers
Ontology editing and updating
SVN, SmartSVN
Term request workflow; proposed ORB workflow
